View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_20 (Length: 346)
Name: NF1777_low_20
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 2783241 - 2783556
Alignment:
| Q |
9 |
gaagaatatatttaagattgcctcatagggagtatgctaaaaagtacaaacctaagatcaactcataccgaaaggaaaatttatatttagaacataagct |
108 |
Q |
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| T |
2783241 |
gaagaacatatttaagattgcctcatacggggtatgctaaaaagtacaaacctaagatcaactcataccgaaaggaaaatttatatttagaacataagct |
2783340 |
T |
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| Q |
109 |
tattcactcaacataataaacctcaagtccc--------------tccctagctttgcactagagaacacgaagctgcgcaaggaaggcaacacaaagat |
194 |
Q |
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| T |
2783341 |
tattcacgcaacataataaacctcaagtccctcatgtgacttaattccctagctttgcactagagaacacgaagctgcgcaaggaaggcaacacaaagat |
2783440 |
T |
|
| Q |
195 |
ccaagaaaagaaactggggatcctcaaccctttgaagatcaaacaaccctttgaagatcaaacagatactactactgagttttgtagagctgtaaaacgg |
294 |
Q |
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| T |
2783441 |
ccaagaaaagaaactggggatcctcaaccctttgaaga-------------------tcaaacagatacttctcctgagttttgtagagctgtaaaacgg |
2783521 |
T |
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| Q |
295 |
ggttgggtagctcaactaatttgagtaagtttaaa |
329 |
Q |
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| T |
2783522 |
ggttgggtagctcaattagtttgagtaagtttaaa |
2783556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 4049678 - 4049763
Alignment:
| Q |
151 |
gcactagagaacacgaagctgcgcaaggaaggcaacacaaagatccaagaaaagaaactggggatcctcaaccctttgaagatcaa |
236 |
Q |
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| T |
4049678 |
gcactacagaacacgaagctgcgcaaggaaggcagcacaaagatccaagaaaagaaactggggtccctcaagtctttgaagatcaa |
4049763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 17408080 - 17407991
Alignment:
| Q |
147 |
ctttgcactagagaacacgaagctgcgcaaggaaggcaacacaaagatccaagaaaagaaactggggatcctcaaccctttgaagatcaa |
236 |
Q |
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| T |
17408080 |
ctttgcattagagaacgcgaagctgtgcaaggaaggcggcacaaagatccaagaaaagaaactggggaccctcaagcctttgaagatcaa |
17407991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 17412683 - 17412607
Alignment:
| Q |
160 |
aacacgaagctgcgcaaggaaggcaacacaaagatccaagaaaagaaactggggatcctcaaccctttgaagatcaa |
236 |
Q |
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| T |
17412683 |
aacatgaagccgctcaaggaaggaagcacaaagatccaagaaagcaaattggggtccctcaagcctttgaatatcaa |
17412607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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