View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1777_low_21 (Length: 345)
Name: NF1777_low_21
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 37195531 - 37195847
Alignment:
| Q |
17 |
aaatactccgtttgtacgttacgatttggtcccaattatggctccacctatctagatactttcattgttcgaacctagatatgagattacacagcagcat |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37195531 |
aaatacttcgtttgtacgttacgatttgttcccaattatggctccacctatctagatactttcattgttcgaacctagatatgagattacacagc---at |
37195627 |
T |
|
| Q |
117 |
gtcatggtgtttatgtatctacctattgccagcacttgagattaatggaaacattttaatcacgtagacaaatacaaatttatttacacaaccaattgtt |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37195628 |
gtcatggtgtttatgtatctagctattgccagcacttgaggttaatagagacattttaatcacgtagacaaatacaaatttatttacacagccaattgtt |
37195727 |
T |
|
| Q |
217 |
atataatattgtgttccaatctctcggatcctgatgtagagcctcacaaggattttgcaatgctggcagctttcccacaacaaaactcccctccaaattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37195728 |
atataatattgtgttccaatctctcggatcctgatgtagagcctcacaaggattttgcaatgctggcagctttcccacaacaaaactcccctccaaattt |
37195827 |
T |
|
| Q |
317 |
ccctttctctctagaataat |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37195828 |
ccctttctctctagaataat |
37195847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University