View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_25 (Length: 329)
Name: NF1777_low_25
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 55014534 - 55014221
Alignment:
| Q |
16 |
ggtttgtgacgtgcgggataagtatttggcgtagactaactcaaggaaagcaattgaagttgcatgttgtaagttgcttccacctggtctgtatatgagt |
115 |
Q |
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| T |
55014534 |
ggtttgtgacgtgcgggataagtatttggcgtagactaactcaaggaaagcaattgaagttgcatgttgtaagttgcttccacctggtctgtatatgagt |
55014435 |
T |
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| Q |
116 |
ccaccaggagtgtactctatgtgtgaacttgatgtttcaggtagtaatgtgcacaggaagctctctgccgaggtcttgtaagattcaagagattcaacat |
215 |
Q |
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| T |
55014434 |
ccaccaggagtgtactcgatgtgtgaacttgatgtttcaggtagtaatgtgcacaggaagctctctgccgaggtcttgtaagattcaagagattcaacat |
55014335 |
T |
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| Q |
216 |
ttccatctaggacttcctataacaacaattcatttactattgatcagcatttacattaaaacaatgtcaaatatatacatttgtgcgatttcaacttatt |
315 |
Q |
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| T |
55014334 |
ttccatctaggacttcctataacaacaattcatttactattgatcagcatttacattaaaacaatgtcaaatatatacatttgtgcgatttcaacttatt |
55014235 |
T |
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| Q |
316 |
aatttaattcctct |
329 |
Q |
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|||||||||||||| |
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| T |
55014234 |
aatttaattcctct |
55014221 |
T |
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