View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_27 (Length: 304)
Name: NF1777_low_27
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_27 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 40113678 - 40113972
Alignment:
| Q |
10 |
aaatgaaagcagtgaagggttgtcataaggaattagaagcaaaagcacaagtagttgcaaatgatgttgtcacagaaactgaactaaccaaaatccgtct |
109 |
Q |
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| T |
40113678 |
aaatggaagcagtgaagggttgtcataaggaattagaagcaaaagcacaagtagttgcaaatgatgttgtcacagaaactgaactaaccaaaatccgtct |
40113777 |
T |
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| Q |
110 |
tgtgagagcctttgttgaaacacaagatccatcttctaaggtacttcttatcatacataaccaacgtctataatattacaaaaaattgcttcatatggtt |
209 |
Q |
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| T |
40113778 |
tgtgagagcctttgttgaaacacaagatccatcttctaaggtacttcttatcatacataaccaacgtctataatattacaaaaaattgcttcatatggtt |
40113877 |
T |
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| Q |
210 |
tggtttggtatcctcacctatattcacatgtttcatacttcataataaagtaaatataaaattcatctcgacaaatatcatgaaacctagttgtt |
304 |
Q |
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| T |
40113878 |
tggtttggtatcctcacctatattcacatgtttcatacttcataataaagtaaatataaaattcatctcgacaaatatcatgaaacctagttgtt |
40113972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 40120994 - 40121083
Alignment:
| Q |
65 |
tgcaaatgatgttgtcacagaaactgaactaaccaaaatccgtcttgtgagagcctttgttgaaacacaagatccatcttctaaggtact |
154 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
40120994 |
tgcaaatgatgctgttacagaaactgaactaaccaaaatccgtcttgtgcgaccctttgttgaaacacaagatccatcttctaaggtact |
40121083 |
T |
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