View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_32 (Length: 249)
Name: NF1777_low_32
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 49145379 - 49145477
Alignment:
| Q |
9 |
attattctcaaagacctcctactccactacttgacactattaactacccaatccacatgaaaaatctctccaccaaggtaaggtacttcactcatatat |
107 |
Q |
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| T |
49145379 |
attattctcaaagacctcctactccactacttgacactattaactacccaatccacatgaaaaatctctccaccaaggtaaggtacttcactcatatat |
49145477 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 49145477 - 49145536
Alignment:
| Q |
136 |
tttatgtatctggatttggactagatgcatccacttta-tttttgaatgtcattggtttt |
194 |
Q |
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| T |
49145477 |
tttatgtatctggatttggactagattcatcgactttattttttgaatgtcattggtttt |
49145536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 49145538 - 49145575
Alignment:
| Q |
212 |
aatgattgattcaggagctgaaacagcttgcggatgaa |
249 |
Q |
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| T |
49145538 |
aatgattgattcaggagctgaaacagcttgcggatgaa |
49145575 |
T |
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