View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_36 (Length: 245)
Name: NF1777_low_36
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7948564 - 7948329
Alignment:
| Q |
1 |
caacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaacaaagctgagtgtgaagagtgatcctggagttgatgg |
100 |
Q |
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| T |
7948564 |
caacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaacaaagctgagtgtgaagagtgatcctggagttgatgg |
7948465 |
T |
|
| Q |
101 |
atcagtagcagctgataagacaccaagttcttctgcttttgaaaggagaccaagtttctctattgttgagagagataatcctgctttctcggctgccgat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7948464 |
atcagtagcagctgataaaacaccaagttcttctgcttttgaaaggagaccaagtttctctattgttgagagagataatcctgctttctcggctgccgat |
7948365 |
T |
|
| Q |
201 |
aataaacctgctttctctgccttggttaacagtctc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7948364 |
aataaacctgctttctctgccttggttaacagtctc |
7948329 |
T |
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