View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_38 (Length: 243)
Name: NF1777_low_38
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6118644 - 6118419
Alignment:
| Q |
1 |
gctacagtttaaatttgttagaatataattatatgggagtgtttgcatgtatatatgatatggcatctcatatgttttctcttgcatgtttagaaggaaa |
100 |
Q |
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| T |
6118644 |
gctacagtttaaatttgttagaatataattatatgggagtgtttgcatgtatatatgatatggcatctcatatgttttctcttgcatgtttagaaggaaa |
6118545 |
T |
|
| Q |
101 |
caacaaaagaacaagaacaagaaagtatgagaacaagatcttccgctttgtgggagaagtatacgtggttttgaggtaatgatttttattattatgaaat |
200 |
Q |
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| T |
6118544 |
caacaaaagaacaagaacaagaaagtatgagaacaagatcttccgctttgtgggagaagtatacgtggttttgaggtaatgatttttattattatgaaat |
6118445 |
T |
|
| Q |
201 |
tggtgtttttaatgattgaattgtat |
226 |
Q |
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| T |
6118444 |
tggtgtttttaatgattgaattgtat |
6118419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 6123248 - 6123080
Alignment:
| Q |
58 |
atatggcatctcatatgttttctcttgcatgtttagaaggaaacaacaaaagaacaagaacaagaaagtatgagaacaagatcttccgctttgtgggaga |
157 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6123248 |
atatggcatctcatatgttttctcatgcatgtttagaaggaaacaacaaaagaacaagaacaagaaagtatgagaacaagatcttcctctttgtgggaga |
6123149 |
T |
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| Q |
158 |
agtatacgtggttttgaggtaatgatttttattattatgaaattggtgtttttaatgattgaattgtat |
226 |
Q |
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| T |
6123148 |
agtatacgtggttttgaggtaataatttttattgttatgaaattggtctttttaatgattgaattgtat |
6123080 |
T |
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