View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_4 (Length: 525)
Name: NF1777_low_4
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 54 - 508
Target Start/End: Original strand, 51858087 - 51858541
Alignment:
| Q |
54 |
ttcgattccgtagtgtctgtgctttatggcgctctattctttcccctccttttcatagacttcatattcaagctgctaagtttttgctactcaccgaaac |
153 |
Q |
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| T |
51858087 |
ttcgattccgtagtgcctgtgctttatggcgctctattctttcccctccttttcatagacttcatattcaagctgctaagtttttgctactcaccgaaac |
51858186 |
T |
|
| Q |
154 |
caaaatatttcgcacacaaccattgttgccaacttcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattccca |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858187 |
caaaatatttcgcacacaaccattgttgccaacttcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattccca |
51858286 |
T |
|
| Q |
254 |
tctaatgtgttagatttcatgaacttacgagttaaggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagc |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51858287 |
tctaatgtgttagatttcatgaacttacgagttaaggaaatgtttcaagcacatactctcagtttttctagatatgggcgtggtttaattgcatttgagc |
51858386 |
T |
|
| Q |
354 |
cccttaatggtgtttataaagtagtgttgttttctgtcgagggtctcggtcaaatggcctttgcctttcatgaagttggaaaattctatgtttccaatat |
453 |
Q |
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| T |
51858387 |
cccttaatggtgtttataaagtagtgttgttttctgtcgagggtctcggtcaaatggcctttgcctttcatgaagatggaaaattctgtgtttccaatat |
51858486 |
T |
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| Q |
454 |
tggatataacaattcgattatagaggatgatgagaatagaatctataatgatata |
508 |
Q |
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| T |
51858487 |
tggatataacaattcgattttagaggatgatgagaatagaatctataatgatata |
51858541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 188 - 504
Target Start/End: Complemental strand, 34865268 - 34864952
Alignment:
| Q |
188 |
tcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagtta |
287 |
Q |
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||||||||| |||||||||||||||||||| || | ||||||| ||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34865268 |
tcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacacactttcccgtctaatgtgttagatttcatgaacttacgagtta |
34865169 |
T |
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| Q |
288 |
aggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagccccttaatggtgtttataaagtagtgttgttttc |
387 |
Q |
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|||| ||||||||||| |||| ||| |||||||||| |||| ||| ||||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
34865168 |
tggaattgtttcaagcatatactatcaatttttctagagatggaggtgatttaattgcatttgagcccctttctgatgtttataaagtagtgttgttttc |
34865069 |
T |
|
| Q |
388 |
tgtcgagggtctcggtcaaatggcctttgcctttcatgaagttggaaaattctatgtttccaatattggatataacaattcgattatagaggatgatgag |
487 |
Q |
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||| ||||||| |||||| |||| |||||| ||||| ||| ||||||||| ||| |||||||||||||||||||||| |||||||| |||||||| | |
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| T |
34865068 |
tgttgagggtcccggtcagatggtctttgctcttcatcaagatggaaaattgcgtgtgtccaatattggatataacaatttgattatagtggatgatggg |
34864969 |
T |
|
| Q |
488 |
aatagaatctataatga |
504 |
Q |
| |
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||||||||||||||||| |
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| T |
34864968 |
aatagaatctataatga |
34864952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 34865455 - 34865308
Alignment:
| Q |
52 |
tcttcgattccgtagtgtctgtgctttatggcgctctattctttcccctccttt------------tcatagacttcatattcaagctgctaagtttttg |
139 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||| |||| || || |||||||||| |
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| T |
34865455 |
tcttcgattccgtagtgtctgtgctttattgcgctctattcttccccctccttttccttctccttctcatacacttcgcattccagatggtaagtttttg |
34865356 |
T |
|
| Q |
140 |
ctactcaccgaaaccaaaatatttcgcacacaaccattgttgccaact |
187 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
34865355 |
cttttcaccgaaaccaaaatatttcgcctacaaccattatttccaact |
34865308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 304
Target Start/End: Original strand, 34145347 - 34145460
Alignment:
| Q |
191 |
aaatctagcaaacttcgtcacttagatattttgactaaca-atcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagttaag |
289 |
Q |
| |
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|||||| | ||| |||||||||||||| | |||||||||| ||| ||| ||||||||| ||||| || |||||||||||||||||||| ||||| | |
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| T |
34145347 |
aaatctggaaaatttcgtcacttagatgtcttgactaacacatc-cataacacacacatacccattcaacgtgttagatttcatgaacttgcgagtaaga |
34145445 |
T |
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| Q |
290 |
gaaatgtttcaagca |
304 |
Q |
| |
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||| ||||||||||| |
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| T |
34145446 |
gaattgtttcaagca |
34145460 |
T |
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