View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1777_low_41 (Length: 238)

Name: NF1777_low_41
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1777_low_41
NF1777_low_41
[»] scaffold0312 (1 HSPs)
scaffold0312 (1-238)||(10586-10823)
[»] chr1 (10 HSPs)
chr1 (1-238)||(419748-419985)
chr1 (1-238)||(975176-975413)
chr1 (1-155)||(924236-924390)
chr1 (47-178)||(936430-936561)
chr1 (4-155)||(916185-916336)
chr1 (8-159)||(909699-909850)
chr1 (1-159)||(960330-960491)
chr1 (1-159)||(942369-942530)
chr1 (58-159)||(949358-949459)
chr1 (58-159)||(971639-971740)


Alignment Details
Target: scaffold0312 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10823 - 10586
Alignment:
Q  1 acccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10823 acccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaa 10724  T
Q  101 gtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||    
T  10723 gtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatct 10624  T
Q  201 gagcaccctttgaccctttcttgatgtttaacttgttg 238  Q
    || |||||||||||||||||||||||||||||||||||    
T  10623 gaacaccctttgaccctttcttgatgtttaacttgttg 10586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 419748 - 419985
Alignment:
Q  1 acccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419748 acccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaa 419847  T
Q  101 gtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||    
T  419848 gtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatct 419947  T
Q  201 gagcaccctttgaccctttcttgatgtttaacttgttg 238  Q
    || |||||||||||||||||||||||||||||||||||    
T  419948 gaacaccctttgaccctttcttgatgtttaacttgttg 419985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 975413 - 975176
Alignment:
Q  1 acccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975413 acccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaa 975314  T
Q  101 gtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcaacgacggtgttctccacaatct 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||    
T  975313 gtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgatcccttgctcttcacactcactgatggtgttcttcacaatct 975214  T
Q  201 gagcaccctttgaccctttcttgatgtttaacttgttg 238  Q
    || |||||||||||||||||||||||||||||||||||    
T  975213 gaacaccctttgaccctttcttgatgtttaacttgttg 975176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 924390 - 924236
Alignment:
Q  1 acccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaa 100  Q
    |||||||||||| |||||   ||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||||||| || ||||| ||||||    
T  924390 acccaacttcttaactccttttgctattatatattgttgtatatcactttctttgttcacttctgttgaaacagcttcaacattgtttccaagcttagaa 924291  T
Q  101 gtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctt 155  Q
    ||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||    
T  924290 gtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctcctt 924236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 936561 - 936430
Alignment:
Q  47 ctttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaacctttt 146  Q
    |||||||| |||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  936561 ctttcttttttcacttctgttgaaacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgatgttacacaaagctttt 936462  T
Q  147 cctctcctttgatcccttgctcttcacactca 178  Q
    ||||||||||||| || |  ||||||||||||    
T  936461 cctctcctttgatgccattttcttcacactca 936430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 916336 - 916185
Alignment:
Q  4 caacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagta 103  Q
    ||||||||| |||||   ||||||| |||||||||||  || ||||||||||||| |||||||||||||||| |||||||| || ||||| |||||||||    
T  916336 caacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttgaaacagcttcaacattgtttccaagcttagaagta 916237  T
Q  104 gtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctt 155  Q
    |||||||||||||| || || |||||||||||||||  ||||||||||||||    
T  916236 gtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt 916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 909850 - 909699
Alignment:
Q  8 ttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtga 107  Q
    |||||||||||   |||||||  |||||||||||||  |||||||   || ||||||||||||||||  |||||||| || ||||| ||  |||||||||    
T  909850 ttcttcactccgtttgctattacatattgttgtaaaccactttctccatttacttctgttgaaacagtgtcaacattgtttccaagcttcaaagtagtga 909751  T
Q  108 aatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgat 159  Q
    |||||| |||||| ||||||||||| ||||||| ||||||||||||||||||    
T  909750 aatcaatcatagattccaatgatgtcacacaaagcttttcctctcctttgat 909699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 960491 - 960330
Alignment:
Q  1 acccaacttcttcactccagatgctattgtatattgttgtaaa---ttactttctttgttcacttctgttgaaacagcctcaacatttttaccaagttta 97  Q
    |||||| |||||||||||   |||||||  ||||||||| |||   ||||| | ||| | |||||||||||||||||| |||||||| || || |||||     
T  960491 acccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttc 960392  T
Q  98 gaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgat 159  Q
    ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||    
T  960391 gaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgat 960330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 942530 - 942369
Alignment:
Q  1 acccaacttcttcactccagatgctattgtatattgttgtaaa---ttactttctttgttcacttctgttgaaacagcctcaacatttttaccaagttta 97  Q
    |||||| |||||||||||   |||||||  ||||||||| |||   ||||| | ||| | |||||||||||||||||| |||||||| || || |||||     
T  942530 acccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttc 942431  T
Q  98 gaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgat 159  Q
    ||| | ||||||||||||||||| |||||||| |||| ||||| ||||||||| ||||||||    
T  942430 gaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgat 942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 949459 - 949358
Alignment:
Q  58 cacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg 157  Q
    ||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||    
T  949459 cacttctgtggaaatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 949360  T
Q  158 at 159  Q
    ||    
T  949359 at 949358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 971740 - 971639
Alignment:
Q  58 cacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg 157  Q
    |||||||||||||||||| |||||||| || || ||||| ||| | ||||||||||||||||| |||||||| |||| ||||| ||||||||| ||||||    
T  971740 cacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttg 971641  T
Q  158 at 159  Q
    ||    
T  971640 at 971639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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