View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_44 (Length: 231)
Name: NF1777_low_44
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 47190476 - 47190274
Alignment:
| Q |
14 |
ataattctccacaaatcaagatttcgccaaatctcaacacttttagcgttgaagcgtctaatccaaaaaactaatatgatcttattttaagttaagtttt |
113 |
Q |
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| T |
47190476 |
ataagtctccacaaatcaagatttcgccaaatctcaacacttttagcgttgaagcgtctaatccaaaaaactaatatgatcttattttaagttaagtttt |
47190377 |
T |
|
| Q |
114 |
atctaaaattgtgattttgttgttgttaaatagagtctaattgtaatgctgaccagcaaaatattctatatggtatattattgaatgattcggtatacaa |
213 |
Q |
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| T |
47190376 |
atctaaaattgtgattttgttgttgttaacgagagtctaattgtactgctgaccggcaaaatattctatatggtatatttttgaatgattcggtatacaa |
47190277 |
T |
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| Q |
214 |
att |
216 |
Q |
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||| |
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| T |
47190276 |
att |
47190274 |
T |
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