View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_7 (Length: 504)
Name: NF1777_low_7
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 488
Target Start/End: Original strand, 50121100 - 50121577
Alignment:
| Q |
10 |
catcatcattccatatcacatcaagtggaattttagctttcttgtaattctcaacaacatcttcaataacagataggttgtgataaccccatctgcattg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121100 |
catcatcattccatatcacatcaagtggaattttagctttcttgtaattctcaacaacatcttcaataacagataggttgtgataaccccatctgcattg |
50121199 |
T |
|
| Q |
110 |
gtggaatcctataaatacaccaaaccaaaaattaaataagtgagcatattggtcatgatgcaacaggtttcaacaaagttgttagttaagagtaaattaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
50121200 |
gtggaatcctataaatacaccaaaccaaaaattaaataagtgagcatattggtcatgatgcaacaggtttcagcaaagttgttagttaagagtaacttaa |
50121299 |
T |
|
| Q |
210 |
tagaatttgtacaggagaacagtctaatctatatatagtcttggcatctggaaattatggactcatagtttgttgttaaatttgctaaaacttctaatat |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121300 |
tagaatttgtataggagaacagtctaatctatatatagtcttggcatctggaaattatggactcatagtttgttgttaaatttgctaaaacttctaatat |
50121399 |
T |
|
| Q |
310 |
tttcttgatcttatctttttctgctaaatccttctagtgtaatgtatattattatgttgctagactacacaatttattctgccatttggnnnnnnnntct |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50121400 |
tttcttgatcttatctttttctgctaaatccttctagtgtaatgtatattattatgttgctagactacacaatttattctgccatttgg-aaaaaaatca |
50121498 |
T |
|
| Q |
410 |
tttcattttcatttaagtgataagaaaatatgcattacaatgatgggactaagatttaagaaagagtgaaaagtgaatc |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50121499 |
tttcattttcatttaagtgataagaaaatatgcattacaatgatgggactaagatttaagaaagagtgaaaagtgaatc |
50121577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 50111077 - 50111188
Alignment:
| Q |
10 |
catcatcattccatatcacatcaagtggaattttagctttcttgtaattctcaacaacatcttcaataacagataggttgtgataaccccatctgcattg |
109 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
50111077 |
catcatcattccatataacatcgagtggaattttggctttattgtaattttcaacaacatcttctacaacagataggttgtgataaccccatctgcattg |
50111176 |
T |
|
| Q |
110 |
gtggaatcctat |
121 |
Q |
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|||||||||||| |
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| T |
50111177 |
gtggaatcctat |
50111188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 23933717 - 23933616
Alignment:
| Q |
18 |
ttccatatcacatcaagtggaattttagctttcttgtaattctcaacaacatcttcaataacagataggttgtgataaccccatctgcattggtggaatc |
117 |
Q |
| |
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||||| |||||||||||||| |||| ||| ||||||||| | || ||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
23933717 |
ttccagatcacatcaagtgggatttgagccttcttgtaactatccacaacatcttcaacaactgatagattgtgatatccccatctgcattggtggaatc |
23933618 |
T |
|
| Q |
118 |
ct |
119 |
Q |
| |
|
|| |
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|
| T |
23933617 |
ct |
23933616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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