View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1777_low_8 (Length: 487)
Name: NF1777_low_8
Description: NF1777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1777_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 263 - 471
Target Start/End: Original strand, 31942529 - 31942736
Alignment:
| Q |
263 |
ataatctctcaaaaagaaggttcgcgctgcatcactccgcaacaaaaagagaagattcgttggagaggagtcttgacgaagaagctcaagattaaagaaa |
362 |
Q |
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| T |
31942529 |
ataatctctcaaaaa-aaggttcgcgccgcatcactccgcaacaaaaagagaagattcgttgcagatgagtcttgacgaagaagctcaagattagaggaa |
31942627 |
T |
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| Q |
363 |
gcatcgagtttagtcatgacatccgaacattgattcccttcgcgaagggtatggataaccgagacatttccttgctcagttaaatcttttttatgtcttg |
462 |
Q |
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| T |
31942628 |
gcattgagtttagtcatgaaatccgaacattgattcccttcacgaaaggtatggataaccgagacatttccttgctcaattaaatcttttttatgtcttg |
31942727 |
T |
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| Q |
463 |
aatcaaagc |
471 |
Q |
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| T |
31942728 |
aatcaaagc |
31942736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 31942281 - 31942450
Alignment:
| Q |
15 |
tggaactgtcgggatttgtttggtccaaacttagccagtacatgcgactatgatttgaaggacgtggtaatattgttcnnnnnnnggtaagaaacatgta |
114 |
Q |
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| T |
31942281 |
tggaactgtcgggatttgtttggtccaaacttagccggtacatgcgactatgatttgaaggacgtggtaatattgttc-ttttttggtaagaaacatgta |
31942379 |
T |
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| Q |
115 |
ttatgtatgtagatggtacttcaaaaaacaaagaaggttatgcagatgaaaattccgaaaaattgcaatac |
185 |
Q |
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| T |
31942380 |
ttatgtatgtagatggtacttcaaaaaacaaaaaaggatatgcagatggaaattccgaaaaattgcaatac |
31942450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 469
Target Start/End: Complemental strand, 26757981 - 26757778
Alignment:
| Q |
264 |
taatctctcaaaaagaaggttcgcgctgcatcactccgcaacaaaaagagaagattcgttggagaggagtcttgacgaagaagctcaagattaaagaaag |
363 |
Q |
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| T |
26757981 |
taatcgctcaaaaagaaggtttcagccgtaccactccgcaacaaagagagaagatctgttagagggaagtcttgatgaagaagttcaagattagaggaag |
26757882 |
T |
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| Q |
364 |
catcgagtttagtcatgacatccgaacattgattcccttcgcgaagggtatggataaccgagacatttccttgctcagttaaatcttttttatgtcttga |
463 |
Q |
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| T |
26757881 |
tcctgagtttagccatgaaactcacacattggttcccttcacgaagggtatggataaccgagacatttccttgttcaattaa--tttttttatgttttga |
26757784 |
T |
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| Q |
464 |
atcaaa |
469 |
Q |
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|||||| |
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| T |
26757783 |
atcaaa |
26757778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 469
Target Start/End: Complemental strand, 35533000 - 35532922
Alignment:
| Q |
389 |
acattgattcccttcgcgaagggtatggataaccgagacatttccttgctcagttaaatcttttttatgtcttgaatcaaa |
469 |
Q |
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||||||||| || || ||||| || ||||||||||||| |||||| |||||| ||||||| | | ||||||||||||||| |
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| T |
35533000 |
acattgatttccctcacgaagtgtgtggataaccgagatatttccatgctcaattaaatc--tctaatgtcttgaatcaaa |
35532922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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