View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17781_high_21 (Length: 222)
Name: NF17781_high_21
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17781_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 9587466 - 9587638
Alignment:
| Q |
16 |
gaagagggtaaaaggcaggcacagccaaagaaaataggagaccattggtgacggagagaaactgtttggagacgacagaaagagacttgaagtagacacc |
115 |
Q |
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| T |
9587466 |
gaagagggtaaaaggcaggcacagccaaagaaaataggagaccattggtgacggagagaaactgtttggagacgacagaaagagacttgaagtagacacc |
9587565 |
T |
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| Q |
116 |
atcgttgacgtcgttgccgttgatgaggaatttgaagacggattaccaacagtcattgggtaaagaaaaatct |
188 |
Q |
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| T |
9587566 |
atcgttgacgtcgttgccgtctatgaagaatttgaagacagattcccaacggtcattgggtaaagaaaaatct |
9587638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 9581934 - 9582100
Alignment:
| Q |
42 |
aaagaaaataggagaccattggtgacggagagaaactgtttggagacgacagaaagagacttgaagtagacaccatcgttgacgtcgttgccgttgatga |
141 |
Q |
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| T |
9581934 |
aaagaaaataggagaccgttggtgatagagagaaactgtttggagacgacagaaagagacttgaagtagaaaccattgttgatgtcgttgtcgtcaatga |
9582033 |
T |
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| Q |
142 |
ggaatttgaagacggattaccaacagtcattgggtaaagaaaaatctgatgctgcaacagcctttgc |
208 |
Q |
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| T |
9582034 |
ggaatttgaagacggattcccaacagtcattaggtaaataaaaatctgttgctgcaaccgccattgc |
9582100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 548270 - 548320
Alignment:
| Q |
59 |
attggtgacggagagaaactgtttggagacgacagaaagagacttgaagta |
109 |
Q |
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| T |
548270 |
attggtgatggagagaaactgttttgagacaacagagagagacttcaagta |
548320 |
T |
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