View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17781_high_4 (Length: 455)
Name: NF17781_high_4
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17781_high_4 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 6 - 440
Target Start/End: Original strand, 31148335 - 31148769
Alignment:
| Q |
6 |
agtagcaaagggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcaca |
105 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31148335 |
agtagcaaaaggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcaca |
31148434 |
T |
|
| Q |
106 |
aaattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcattcggtagttggcttataccacaaaaactaatatcaagatcattca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31148435 |
aaattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcattcggtagttggcttataccacaaaaactaatatcaagatcattca |
31148534 |
T |
|
| Q |
206 |
aacaagataagctaagcaaggaatgcagaaaacgactagctatatctatgtgtgcatagggatacaaggaatggaaatgaatcctggtccattttaagat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31148535 |
aacaagataagctaagcaaggaatgcagaaaacgactagctatatctttgtgtgcatagggatacaaggaatggaaatgaatcctggtccattttaagat |
31148634 |
T |
|
| Q |
306 |
tgaggaagttgttgattgaaaatgtgatgaactttcacttgaatcatacttcctcaattgccttggattcttaaacactttggaacaccccgaaagattt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31148635 |
tgaggaagttgttgattgaaaatgtgatgaactttcacttgaatcatgcttcctcaattgccttggattcttaaacactttggaacaccccgaaagattt |
31148734 |
T |
|
| Q |
406 |
agacattcaagagagctgagaccaaatatattttt |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31148735 |
agacattcaagagagctgagaccaaatatattttt |
31148769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 6 - 430
Target Start/End: Original strand, 31157249 - 31157661
Alignment:
| Q |
6 |
agtagcaaagggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcaca |
105 |
Q |
| |
|
||||| ||| |||||||||||||| |||| ||| | ||| ||||||| ||||||||||||| ||||| |||| |||| ||| |||||||| | |||||| |
|
|
| T |
31157249 |
agtaggaaaaggaagttgaggcaaagattccaaaagcttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggcagtgtcaca |
31157348 |
T |
|
| Q |
106 |
aaattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcattcggtagttggcttataccacaaaaactaatatcaagatcattca |
205 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| | | ||| || ||||||||||| || || | ||||| |||||| ||||| ||||||| ||| ||| |
|
|
| T |
31157349 |
aaattgttcccccctatatttaatctttctagtcgaagtagacatccaattgcatcagggagatagcttagaccacagaaactgatatcaacttcactca |
31157448 |
T |
|
| Q |
206 |
aacaagataagctaagcaaggaatgcagaaaacgactagctatatctatgtgtgcatagggatacaaggaatggaaatgaatcctggtccattttaagat |
305 |
Q |
| |
|
|||| ||| |||||| || ||| | || |||| ||||| || | | | ||| ||||||||||||| ||| ||| |||||||||| ||| |
|
|
| T |
31157449 |
aacagtatatgctaagaaaagaaggtagcaaacaactagttaaaac------ttcat---gatacaaggaatgcaaaccaattgtggtccatttcaag-- |
31157537 |
T |
|
| Q |
306 |
tgaggaagttgttgattgaaaatgtgatgaactttcacttgaatcatacttcctcaattgccttggattcttaaacactttggaacaccccgaaagattt |
405 |
Q |
| |
|
||||||||||||||||| |||| || || | ||||| |||||| | ||| |||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
31157538 |
-gaggaagttgttgattgggaatgaaataaaatatcactcgaatcaaatttcttcaaatgccttggattgttaaacactttggaacacccggaaagattt |
31157636 |
T |
|
| Q |
406 |
agacattcaagagagctgagaccaa |
430 |
Q |
| |
|
||| ||| ||||||||||||||||| |
|
|
| T |
31157637 |
agatatttaagagagctgagaccaa |
31157661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 291 - 434
Target Start/End: Original strand, 31032446 - 31032589
Alignment:
| Q |
291 |
ggtccattttaagattgaggaagttgttgattgaaaatgtgatgaactttcacttgaatcatacttcctcaattgccttggattcttaaacactttggaa |
390 |
Q |
| |
|
||||||||| ||||| ||| || ||||| || || |||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||||| |
|
|
| T |
31032446 |
ggtccatttcaagatcgagtaaattgttaatggagaatgtgatgaactttcacttgaattgaggttcttcaattgcattggattgttaaacactttggaa |
31032545 |
T |
|
| Q |
391 |
caccccgaaagatttagacattcaagagagctgagaccaaatat |
434 |
Q |
| |
|
||||| |||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
31032546 |
cacccggaaagatttagatatttaagagaggtgagaccaaatat |
31032589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 434
Target Start/End: Original strand, 31017625 - 31018005
Alignment:
| Q |
51 |
ctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttccccctagatttaatctttctagccaacgtaaacgt |
150 |
Q |
| |
|
|||||||| ||||||| ||||| | || |||| ||| || ||||| | |||||||||||||||||| || | ||||||| ||| ||| |||| || | |
|
|
| T |
31017625 |
ctgcaagtctaaatatacaagtttagaaagctccctgagactaggcagagtcacaaaattgtttcccgataaaactaatcttcctaaccatcgtatacat |
31017724 |
T |
|
| Q |
151 |
ccaattgcattcggtagttggcttataccacaaaaactaatatcaagatcattcaaacaagataagctaagcaaggaatgcagaaaacgactagctatat |
250 |
Q |
| |
|
||||| |||| || | |||||||| ||| ||||||||||||||||| || |||| | | |||||| ||||||| || ||||||||| ||| | |
|
|
| T |
31017725 |
ccaatagcatctgggatttggcttagaccgcaaaaactaatatcaagttcccgcaaaaagaaaaagctaggcaaggatgacaacaaacgactaactaaac |
31017824 |
T |
|
| Q |
251 |
ctatgtgtgcatagggatacaaggaatggaaatgaatcctggtccattttaagattgaggaagttgttgattgaaaatgtgatgaactttcacttgaatc |
350 |
Q |
| |
|
|| ||||||||| ||||||||||||| ||| |||| ||||| || | ||| ||||||||| ||||||| ||||| | | ||||||| ||||| |
|
|
| T |
31017825 |
ctttgtgtgcattctgatacaaggaatgtaaaccaatcgtggtcaatatcaag---gaggaagtttttgattgggaatgtagtacagtttcactcgaatc |
31017921 |
T |
|
| Q |
351 |
atacttcctcaattgccttggattcttaaacactttggaacaccccgaaagatttagacattcaagagagctgagaccaaatat |
434 |
Q |
| |
|
| ||| |||| ||| |||||| |||||||||||||||||||| |||||||||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
31017922 |
aagtttcttcaaatgctttggatagttaaacactttggaacacccagaaagatttagatatttaagagaggtgagaacaaatat |
31018005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 31499014 - 31498843
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||||||||||| |||| |||||| || ||||| | ||||||||| || ||||| |||| || | ||| |||||||||| |||||||| ||||||| |
|
|
| T |
31499014 |
ggaagttgaggcaaagattccaacaatttgcaatgttctaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtttc |
31498915 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaaacgtccaattgcattcggtagttggcttataccacaaaaac |
187 |
Q |
| |
|
|||||| |||||| ||||| |||| |||||| ||||||||||| || |||||| ||| ||||||||||| |
|
|
| T |
31498914 |
cccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttggtttagaccacaaaaac |
31498843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 31478951 - 31478814
Alignment:
| Q |
24 |
aggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttccccctaga |
123 |
Q |
| |
|
|||||| |||||||||| ||| ||||||| ||| |||||||| ||||| | || |||| ||| || |||||||| |||||||||||||||||||||| | |
|
|
| T |
31478951 |
aggcaaagatttcaacagcttgcaatgctctaagcttaaatatacaagttttgaaagctccctcagactaggtactgtcacaaaattgtttccccctaaa |
31478852 |
T |
|
| Q |
124 |
tttaatctttctagccaacgtaaacgtccaattgcatt |
161 |
Q |
| |
|
|||||| ||||| |||| || || |||||||||||| |
|
|
| T |
31478851 |
tttaatgcttctaaccaatatagacatccaattgcatt |
31478814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 31504136 - 31504039
Alignment:
| Q |
24 |
aggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttcccccta |
121 |
Q |
| |
|
|||||| |||| ||||| || ||||||| ||||||||||||| ||||| |||| |||| ||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
31504136 |
aggcaaagattccaacagtttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggtactgtcacaaaattatttcccccta |
31504039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 31027725 - 31027852
Alignment:
| Q |
100 |
gtcacaaaattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcattcggtagttggcttataccacaaaaactaatatcaagat |
199 |
Q |
| |
|
|||||||||||||||||| || | |||||||| ||||||| ||| || ||||||||||| || | |||||| | ||||||||||||||||||||| | |
|
|
| T |
31027725 |
gtcacaaaattgtttcccattaaaattaatcttcctagccatggtatacatccaattgcatctggcatttggctcagaccacaaaaactaatatcaagtt |
31027824 |
T |
|
| Q |
200 |
cattcaaacaagataagctaagcaagga |
227 |
Q |
| |
|
| |||| | || |||||||||||||| |
|
|
| T |
31027825 |
cccacaaaaaggaaaagctaagcaagga |
31027852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 31027951 - 31028026
Alignment:
| Q |
359 |
tcaattgccttggattcttaaacactttggaacaccccgaaagatttagacattcaagagagctgagaccaaatat |
434 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
31027951 |
tcaaatgccttgtattggtaaacactttggaacaccaggaaagatttagatatttaagagaggtgagaccaaatat |
31028026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 31526533 - 31526651
Alignment:
| Q |
100 |
gtcacaaaattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcattcggtagttggcttataccacaaaaactaatatcaagat |
199 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| ||| | ||||| |||| || | |||||||| || ||| ||||||||||||| | |
|
|
| T |
31526533 |
gtcacaaaattgtttccccctaaatttaatctttctaaccaaagtaggcaaccaatagcatcagggatttggcttaaactgcaataactaatatcaagtt |
31526632 |
T |
|
| Q |
200 |
cattcaaacaagataagct |
218 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
31526633 |
tacgcaaacaggataagct |
31526651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 31472465 - 31472390
Alignment:
| Q |
55 |
aagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttccccctagatttaatc |
130 |
Q |
| |
|
|||||||||||| ||||| |||| |||| ||| |||||||||| ||||||||||| || || |||| |||||||| |
|
|
| T |
31472465 |
aagtttaaatatacaagtttggaaagctccctcgggctaggtactgtcacaaaattattccctcctacatttaatc |
31472390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 689 - 833
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||||| |||||||| | |||||||| ||||||||||| |||| |
|
|
| T |
689 |
ggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatatacaagtctggaaagcttcctcatgctaggtagtgtcacaaaattatttc |
788 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | ||||||||| |
|
|
| T |
789 |
cccctaaatttaatctttctagccgatgtaaacattcaattgcat |
833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 6435 - 6579
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||||| |||||||| | |||||||| ||||||||||| |||| |
|
|
| T |
6435 |
ggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatatacaagtctggaaagcttcctcatgctaggtagtgtcacaaaattatttc |
6534 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | ||||||||| |
|
|
| T |
6535 |
cccctaaatttaatctttctagccgatgtaaacattcaattgcat |
6579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 33057602 - 33057755
Alignment:
| Q |
7 |
gtagcaaagggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaa |
106 |
Q |
| |
|
|||| ||| |||||||||||||| |||| |||||| || ||||||| ||| ||||||||| ||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
33057602 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggatagcttcctcaggctaggtaatgtcacaa |
33057701 |
T |
|
| Q |
107 |
aattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
33057702 |
aatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgcat |
33057755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 33271867 - 33272011
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||| ||||||| |||| ||||||||| ||||| | ||| ||||||||| ||||| |||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
33271867 |
ggaagtcgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaattgtttc |
33271966 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
|||||| || |||||||||||||||| |||||| | ||||||||| |
|
|
| T |
33271967 |
cccctaaatctaatctttctagccaatgtaaacattcaattgcat |
33272011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 33285651 - 33285804
Alignment:
| Q |
7 |
gtagcaaagggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaa |
106 |
Q |
| |
|
|||| ||| |||||||||||||| |||| ||||||||| ||||||| ||| ||||||||| ||||| |||| ||||| || |||||||||| ||||||| |
|
|
| T |
33285651 |
gtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctccaaatttaaatatacaagtttggacagctttctcaggctaggtagtgtcacaa |
33285750 |
T |
|
| Q |
107 |
aattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||| ||||| | ||||||||| |
|
|
| T |
33285751 |
aattgtttccccctaagtttaatatttctagccaatataaacattcaattgcat |
33285804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 33358900 - 33359053
Alignment:
| Q |
7 |
gtagcaaagggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaa |
106 |
Q |
| |
|
|||| ||| |||||||||||||| |||| ||||||||| ||||| | ||| ||||||||| ||||| | || |||||||| |||||||||| ||||||| |
|
|
| T |
33358900 |
gtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttagaaagcttcctcaggctaggtagtgtcacaa |
33358999 |
T |
|
| Q |
107 |
aattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
||| ||||||||||| ||||||| ||||||||||| |||||| | ||||||||| |
|
|
| T |
33359000 |
aatcgtttccccctaaatttaatatttctagccaatgtaaacattcaattgcat |
33359053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 33262668 - 33262798
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||||||||||| |||| ||||||| | ||||||| ||| ||||||||| ||||| |||| |||||||| |||||||||| |||||||||| |||| |
|
|
| T |
33262668 |
ggaagttgaggcaaagattccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaatcatttc |
33262767 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaa |
146 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |
|
|
| T |
33262768 |
cccctaaatttaatctttctagccaatgtaa |
33262798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 33304526 - 33304648
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||||||||||| |||| ||||||| | ||||||||||| ||||||||| ||||| |||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
33304526 |
ggaagttgaggcaaagattccaacaacatgcaatgctgcaaatttaaatatacaagtttggaaagcttcctcaggctaggtagagtcacaaaattgtttc |
33304625 |
T |
|
| Q |
116 |
cccctagatttaatctttctagc |
138 |
Q |
| |
|
|| ||| ||||||||||||||| |
|
|
| T |
33304626 |
cctctaagtttaatctttctagc |
33304648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 33410038 - 33410191
Alignment:
| Q |
7 |
gtagcaaagggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaa |
106 |
Q |
| |
|
|||| ||| |||||||||||||| |||| ||||||||| ||||||||||| | ||||||| ||||| |||| |||||||| | |||||||| ||||||| |
|
|
| T |
33410038 |
gtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatctaaatattcaagtttggaaagcttcctcaagctaggtagtgtcacaa |
33410137 |
T |
|
| Q |
107 |
aattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
||| ||||||| ||| || ||||||||||||| || |||||| | ||||||||| |
|
|
| T |
33410138 |
aatagtttcccgctaaatataatctttctagcgaatgtaaaccttcaattgcat |
33410191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 33644506 - 33644365
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || || | ||| ||||||||| ||||| |||| |||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
33644506 |
ggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaatagtttc |
33644407 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaaacgtccaattg |
157 |
Q |
| |
|
|||||| |||||||||||||||| || |||||| | |||||| |
|
|
| T |
33644406 |
cccctaaatttaatctttctagcgaatgtaaacattcaattg |
33644365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 31562787 - 31562643
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||| ||| ||||||||| ||||| |||| ||||||| | |||||||| |||||||||| ||||| |
|
|
| T |
31562787 |
ggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttc |
31562688 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
|||||| |||||||||||||||| | | ||||| | ||||||||| |
|
|
| T |
31562687 |
cccctaaatttaatctttctagcgagcttaaacattcaattgcat |
31562643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 33399096 - 33399240
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || || | ||| ||||||||| ||||| ||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
33399096 |
ggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagttcggaaagcttcctcaggctaggtagtgtcacaaaattgtttc |
33399195 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaaacgtccaattgcat |
160 |
Q |
| |
|
|| || ||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
33399196 |
cctttaaatttaatctttctagccaatgtaaatcttcaattgcat |
33399240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 33388202 - 33388323
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
||||||||||| || |||||||| ||||| ||||||| ||| ||||||||| ||||| |||| |||||||| | |||||||| |||||||||| ||||| |
|
|
| T |
33388202 |
ggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtttc |
33388301 |
T |
|
| Q |
116 |
cccctagatttaatctttctag |
137 |
Q |
| |
|
|||||| ||||||| ||||||| |
|
|
| T |
33388302 |
cccctaaatttaatttttctag |
33388323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 28870135 - 28870013
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||| ||| ||||||||| ||||| |||| |||||||| |||||||| | |||||||||| ||||| |
|
|
| T |
28870135 |
ggaagttgaggcaaagattcaaacaacttgcaatgctccaaatttaaatattcaagtttggaaagcttcctcaggctaggcagtgtcacaaaatagtttc |
28870036 |
T |
|
| Q |
116 |
cccctagatttaatctttctagc |
138 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
28870035 |
cccgtaagtttaatctttctagc |
28870013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 9166794 - 9166935
Alignment:
| Q |
16 |
ggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttc |
115 |
Q |
| |
|
|||||||||||||| | | ||||||| | ||||||| ||| ||||||||| ||||| |||| |||||||| | |||||||| ||| |||||| | ||| |
|
|
| T |
9166794 |
ggaagttgaggcaaaaactccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcgcaaaatcgattc |
9166893 |
T |
|
| Q |
116 |
cccctagatttaatctttctagccaacgtaaacgtccaattg |
157 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| | |||||| |
|
|
| T |
9166894 |
cccctaagtttaatctttctagccaccgtaaacattcaattg |
9166935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 17440855 - 17440638
Alignment:
| Q |
7 |
gtagcaaagggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaa |
106 |
Q |
| |
|
|||| ||| |||||||||||||| |||| ||||||||| ||||||||||| ||||||||| ||||| | || |||||||| |||||||||| ||| ||| |
|
|
| T |
17440855 |
gtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatttaaatatacaagtttcgaaagcttcctcaggctaggtagtgtcgcaa |
17440756 |
T |
|
| Q |
107 |
aattgtttccccctagatttaatctttctagccaacgtaaacgtccaattgcattcggtagttggcttataccacaaaaactaatatcaagatcattcaa |
206 |
Q |
| |
|
||| |||||||||| |||||||||||||| |||| |||||| | |||||| || ||| | |||||||| || ||||||||||| |||| ||| ||| |
|
|
| T |
17440755 |
aatcatttccccctaaatttaatctttctacccaatgtaaacattcaattgtatccggcacttggcttagacggcaaaaactaatgtcaacttcacgcaa |
17440656 |
T |
|
| Q |
207 |
acaagataagctaagcaa |
224 |
Q |
| |
|
|||| |||||||| |||| |
|
|
| T |
17440655 |
acaatataagctatgcaa |
17440638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 6785337 - 6785236
Alignment:
| Q |
32 |
atttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtttccccctagatttaatct |
131 |
Q |
| |
|
||||||||||||| || || | ||||||||||||| | ||| |||| |||| | | |||||||| | |||||||||| ||||||||||| ||||||||| |
|
|
| T |
6785337 |
atttcaacaacttgcagtgatccaagtttaaatatacgagtttggaaagctccttcaggctaggcaatgtcacaaaatggtttccccctaaatttaatct |
6785238 |
T |
|
| Q |
132 |
tt |
133 |
Q |
| |
|
|| |
|
|
| T |
6785237 |
tt |
6785236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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