View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17781_low_11 (Length: 292)

Name: NF17781_low_11
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17781_low_11
NF17781_low_11
[»] chr4 (5 HSPs)
chr4 (37-270)||(27748375-27748605)
chr4 (104-165)||(38354484-38354545)
chr4 (98-162)||(40252701-40252764)
chr4 (98-162)||(22889305-22889369)
chr4 (98-162)||(22940969-22941033)
[»] chr1 (6 HSPs)
chr1 (99-165)||(40341644-40341710)
chr1 (104-165)||(30548315-30548376)
chr1 (99-162)||(48884-48947)
chr1 (109-162)||(33791747-33791800)
chr1 (98-161)||(34861209-34861272)
chr1 (109-140)||(43216300-43216331)
[»] chr6 (2 HSPs)
chr6 (96-162)||(21130742-21130808)
chr6 (96-162)||(10364788-10364854)
[»] chr5 (1 HSPs)
chr5 (96-165)||(26432304-26432373)
[»] chr8 (2 HSPs)
chr8 (115-165)||(37449582-37449632)
chr8 (109-162)||(44907264-44907317)
[»] chr2 (3 HSPs)
chr2 (96-165)||(9448497-9448567)
chr2 (110-162)||(2796536-2796588)
chr2 (98-137)||(40874886-40874925)
[»] chr7 (4 HSPs)
chr7 (96-141)||(5907889-5907934)
chr7 (96-162)||(8237995-8238061)
chr7 (98-163)||(39241615-39241680)
chr7 (98-142)||(34299740-34299784)
[»] chr3 (1 HSPs)
chr3 (98-162)||(25317850-25317914)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 37 - 270
Target Start/End: Complemental strand, 27748605 - 27748375
Alignment:
Q  37 ttaaagctaaacattttactgtataataagagtaggaaaatgttaactagtgtcggacatagttaaggaccataaatagtaaacttttatgaaagttagt 136  Q
    ||||||||||||||||||     |||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  27748605 ttaaagctaaacatttta-----taataaaagtaggaaaatgttaactagtgtcggatatacttaaggaccataaataataaacttttatgaaagttagt 27748511  T
Q  137 gtaatcggtatattgaaaattgaaaagttaaataatttnnnnnnntaattacttagttt--aatgtttaaagaatgtcccgtgacactggttaacaagat 234  Q
    ||||||| |||||||||||||||||||||||||| |||       ||||||||||||||  |||||||||||| |||||||||||||| |||||||||||    
T  27748510 gtaatcgatatattgaaaattgaaaagttaaatacttttaaaaaataattacttagtttagaatgtttaaagagtgtcccgtgacactcgttaacaagat 27748411  T
Q  235 ccataaatatatgataaacaagaaataagagaacta 270  Q
    |||||||||||||||||||||||||| |||||||||    
T  27748410 ccataaatatatgataaacaagaaatgagagaacta 27748375  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 38354484 - 38354545
Alignment:
Q  104 gaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaagtt 165  Q
    |||| ||||| |||||||||||| ||||||||||||||| || ||||  |||||||||||||    
T  38354484 gaccttaaatggtaaacttttattaaagttagtgtaatcagtgtattagaaattgaaaagtt 38354545  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 40252764 - 40252701
Alignment:
Q  98 gttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    |||||||||  ||||||||||| ||||||||||||| ||||||||  | ||||||||||||||||    
T  40252764 gttaaggactttaaatagtaaatttttatgaaagtt-gtgtaatcaatgtattgaaaattgaaaa 40252701  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 22889369 - 22889305
Alignment:
Q  98 gttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    ||||| |||| |||||  |||||||||||||||||||| ||||  |||  |||||||||||||||    
T  22889369 gttaatgaccttaaatgataaacttttatgaaagttagagtaactggtgcattgaaaattgaaaa 22889305  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 22941033 - 22940969
Alignment:
Q  98 gttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    ||||| |||| |||||  |||||||||||||||||||| ||||  |||  |||||||||||||||    
T  22941033 gttaatgaccttaaatgataaacttttatgaaagttagagtaactggtgcattgaaaattgaaaa 22940969  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 40341710 - 40341644
Alignment:
Q  99 ttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaagtt 165  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  40341710 ttaaggaccttaaatcgtaaacttttatgaaagttagtgtaattggtgcattgaaaattgaaaagtt 40341644  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 30548376 - 30548315
Alignment:
Q  104 gaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaagtt 165  Q
    |||| ||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  30548376 gaccttaaatggtaaacttttatgaaagttagtgtaatcagtgtattggaaattgaaaagtt 30548315  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 48884 - 48947
Alignment:
Q  99 ttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    ||||| ||| || |||||||| ||||||||||||| |||||||||||  |||||||||||||||    
T  48884 ttaagaaccttacatagtaaatttttatgaaagtttgtgtaatcggtgcattgaaaattgaaaa 48947  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 33791747 - 33791800
Alignment:
Q  109 taaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    ||||||||||  ||||||||||||| ||||||||||| ||||| ||||||||||    
T  33791747 taaatagtaactttttatgaaagtttgtgtaatcggtgtattggaaattgaaaa 33791800  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 34861209 - 34861272
Alignment:
Q  98 gttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaa 161  Q
    ||||| |||| |||||||| ||||||||||||| |||||| |||| || ||||| |||||||||    
T  34861209 gttaatgaccttaaatagttaacttttatgaaatttagtgaaatcagtgtattggaaattgaaa 34861272  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 43216300 - 43216331
Alignment:
Q  109 taaatagtaaacttttatgaaagttagtgtaa 140  Q
    ||||||||||||||||||||||||||||||||    
T  43216300 taaatagtaaacttttatgaaagttagtgtaa 43216331  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 21130808 - 21130742
Alignment:
Q  96 tagttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||  || ||||||||||| ||||    
T  21130808 tagttaaggaccttaaatagtaaacttttatgaaagttggtgcaattagtgtattgaaaattaaaaa 21130742  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 10364854 - 10364788
Alignment:
Q  96 tagttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    |||||||||||| ||||||||||| ||||||||||||| || ||||| ||  |||| ||||||||||    
T  10364854 tagttaaggaccttaaatagtaaatttttatgaaagttcgtataatcagtgcattgtaaattgaaaa 10364788  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 26432373 - 26432304
Alignment:
Q  96 tagttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaagtt 165  Q
    |||||||| |||  |||| ||||| |||||||||||||||||||||| ||| |||| |||||||||||||    
T  26432373 tagttaagaacctaaaatggtaaatttttatgaaagttagtgtaatcagtacattggaaattgaaaagtt 26432304  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 37449632 - 37449582
Alignment:
Q  115 gtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaagtt 165  Q
    ||||||||||||||||||||| |||||  || |||||||||||||||||||    
T  37449632 gtaaacttttatgaaagttagcgtaattagtgtattgaaaattgaaaagtt 37449582  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 44907317 - 44907264
Alignment:
Q  109 taaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    ||||||||||| |||||||||||||||||| ||  ||  |||||||||||||||    
T  44907317 taaatagtaaatttttatgaaagttagtgttattagtgcattgaaaattgaaaa 44907264  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 9448567 - 9448497
Alignment:
Q  96 tagttaaggaccataaatagtaaacttttatgaaagttagtgta-atcggtatattgaaaattgaaaagtt 165  Q
    |||||||||||| |||||| |||||||||||||||||||||  | ||| ||  ||||||||||||||||||    
T  9448567 tagttaaggaccttaaataataaacttttatgaaagttagtacacatcagtgcattgaaaattgaaaagtt 9448497  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 2796536 - 2796588
Alignment:
Q  110 aaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    |||||||||  |||||| |||||| |||||||| |||||||||||||||||||    
T  2796536 aaatagtaattttttataaaagtttgtgtaatcagtatattgaaaattgaaaa 2796588  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 40874925 - 40874886
Alignment:
Q  98 gttaaggaccataaatagtaaacttttatgaaagttagtg 137  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  40874925 gttaaggactttaaatagtaaacttttatgaaagttagtg 40874886  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 5907934 - 5907889
Alignment:
Q  96 tagttaaggaccataaatagtaaacttttatgaaagttagtgtaat 141  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||    
T  5907934 tagttaaggactttaaatagtaaacttttatgaaaattagtgtaat 5907889  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 8238061 - 8237995
Alignment:
Q  96 tagttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    |||||||||||| ||||| ||||  ||||||||||||| |||||||| ||  |||||||| ||||||    
T  8238061 tagttaaggaccttaaatggtaactttttatgaaagtttgtgtaatcagtgcattgaaaaatgaaaa 8237995  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 39241680 - 39241615
Alignment:
Q  98 gttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaag 163  Q
    ||||||||||  |||| ||||||||||||||||| |||| ||||| ||  |||| |||||||||||    
T  39241680 gttaaggacctaaaatggtaaacttttatgaaagctagtataatcagtccattggaaattgaaaag 39241615  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 34299740 - 34299784
Alignment:
Q  98 gttaaggaccataaatagtaaacttttatgaaagttagtgtaatc 142  Q
    |||||||||| ||||||||||  ||||||||||||| ||||||||    
T  34299740 gttaaggaccttaaatagtaactttttatgaaagtttgtgtaatc 34299784  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 25317914 - 25317850
Alignment:
Q  98 gttaaggaccataaatagtaaacttttatgaaagttagtgtaatcggtatattgaaaattgaaaa 162  Q
    |||||||||| ||||||||||| |||||| |||||| ||||||||| |  |||| ||||||||||    
T  25317914 gttaaggaccttaaatagtaaatttttataaaagtttgtgtaatcgatgcattggaaattgaaaa 25317850  T

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