View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17781_low_12 (Length: 277)

Name: NF17781_low_12
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17781_low_12
NF17781_low_12
[»] chr8 (11 HSPs)
chr8 (84-260)||(6133620-6133798)
chr8 (84-260)||(6132437-6132612)
chr8 (111-247)||(45015327-45015463)
chr8 (111-252)||(42127373-42127514)
chr8 (112-252)||(42128785-42128925)
chr8 (115-252)||(2376928-2377066)
chr8 (115-260)||(38119729-38119875)
chr8 (143-246)||(43713121-43713224)
chr8 (143-252)||(28322728-28322837)
chr8 (158-247)||(4629678-4629766)
chr8 (138-252)||(43711599-43711713)
[»] chr2 (12 HSPs)
chr2 (86-260)||(26380656-26380830)
chr2 (84-247)||(26379385-26379548)
chr2 (111-252)||(28240725-28240866)
chr2 (111-252)||(28239367-28239508)
chr2 (84-260)||(3833513-3833689)
chr2 (168-247)||(26271631-26271710)
chr2 (84-252)||(5062072-5062240)
chr2 (84-159)||(36404276-36404351)
chr2 (88-181)||(36681178-36681271)
chr2 (88-208)||(36682269-36682389)
chr2 (86-159)||(36403966-36404039)
chr2 (102-252)||(5060731-5060880)
[»] chr4 (9 HSPs)
chr4 (111-260)||(11384197-11384346)
chr4 (112-252)||(11385616-11385756)
chr4 (115-246)||(1560074-1560206)
chr4 (84-252)||(44491732-44491902)
chr4 (149-252)||(44493168-44493271)
chr4 (155-259)||(21072132-21072236)
chr4 (84-159)||(29214034-29214109)
chr4 (102-159)||(29214965-29215022)
chr4 (199-260)||(32133466-32133527)
[»] chr6 (4 HSPs)
chr6 (84-260)||(22970096-22970271)
chr6 (84-260)||(23818123-23818298)
chr6 (149-260)||(22971413-22971524)
chr6 (149-260)||(23816874-23816985)
[»] chr1 (3 HSPs)
chr1 (93-244)||(48677972-48678123)
chr1 (85-159)||(48571743-48571817)
chr1 (199-243)||(48676937-48676981)
[»] chr3 (8 HSPs)
chr3 (84-252)||(38525654-38525822)
chr3 (84-216)||(2766275-2766408)
chr3 (102-252)||(38524365-38524515)
chr3 (84-209)||(2767154-2767279)
chr3 (85-126)||(2753270-2753311)
chr3 (143-260)||(45512562-45512679)
chr3 (143-246)||(45511042-45511145)
chr3 (166-211)||(2753331-2753376)
[»] chr5 (3 HSPs)
chr5 (114-260)||(35238022-35238169)
chr5 (146-247)||(8284909-8285010)
chr5 (143-260)||(35237292-35237410)
[»] scaffold0912 (1 HSPs)
scaffold0912 (89-159)||(1703-1773)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 84 - 260
Target Start/End: Original strand, 6133620 - 6133798
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgat--ggacggaggtaactta 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||   |||||| ||||||||    
T  6133620 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaacattttttaacaaaagttaacataatggatttaaatgatagagacggatgtaactta 6133719  T
Q  182 aaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  6133720 aaggaccaaaatggggcgaaaattaataagaagacaaaatcgaaatttcataattatttaagggaccatttgtataatt 6133798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 6132612 - 6132437
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 183  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||| |||||    
T  6132612 gggtttgaggatgaagttgatgcaggaggaagatgaatgttaacattttttaacaaaagttaacataatggatttaaatgatggacagagataaattaaa 6132513  T
Q  184 ggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
    |||||||||||| | |||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||| |||||    
T  6132512 ggaccaaaatggaacgaaaattaataagaggaccaaatcaaaatttcataatta-ttaagggaccatttgtgtaatt 6132437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 45015463 - 45015327
Alignment:
Q  111 ggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataa 210  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45015463 ggaagatgaatgttaacagtttttcacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggacgaaaattaataa 45015364  T
Q  211 gaggacaaaatcgaaatttcataattatttaagggac 247  Q
    | |||  ||||  ||||||||||||||||||||||||    
T  45015363 ggggatcaaattaaaatttcataattatttaagggac 45015327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 42127514 - 42127373
Alignment:
Q  111 ggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataa 210  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||| |||    
T  42127514 ggaagatgaatgttaacagtttttcacaaaagttaacagaatggatttaaatgatggacggaggtaatttaaaggaccgaaatggaacgaaaattattaa 42127415  T
Q  211 gaggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
    | |||| |||| ||||| ||||||||||||||||||| ||||    
T  42127414 ggggaccaaattgaaatctcataattatttaagggaccattt 42127373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 42128785 - 42128925
Alignment:
Q  112 gaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataag 211  Q
    ||||||||||||||| | ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||     
T  42128785 gaagatgaatgttaacagtttttcacaaaagttaacagaatggatttaaatgatagagggaggtaacttaaaggaccaaaatgggacgaaaattaataaa 42128884  T
Q  212 aggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
     | || |||| ||||| |||||||||||||| |||| ||||    
T  42128885 ggaaccaaattgaaatctcataattatttaaaggaccattt 42128925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 252
Target Start/End: Complemental strand, 2377066 - 2376928
Alignment:
Q  115 gatgaatgttaatatttttta-acaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagag 213  Q
    ||||||| |||| |||||||  |||| | |||||| ||||||||||| |||||||||| ||||| ||||||||||||| || |   |||||||||||| |    
T  2377066 gatgaatattaacattttttccacaagatttaacataatggatttaactgatggacgggggtaatttaaaggaccaaattgaggcaaaaattaataaggg 2376967  T
Q  214 gacaaaatcgaaatttcataattatttaagggacgattt 252  Q
    ||  |||| ||||||||||||||||||||||||| ||||    
T  2376966 gatcaaattgaaatttcataattatttaagggaccattt 2376928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 260
Target Start/End: Complemental strand, 38119875 - 38119729
Alignment:
Q  115 gatgaatgttaatatttttta-acaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagag 213  Q
    ||||||||||||  ||||||  |||| | ||| ||||||||||| || |||| ||||||||||| ||||||||  ||| |||| ||||||||||||||||    
T  38119875 gatgaatgttaacgttttttccacaagatttatcagaatggattcaattgatagacggaggtaatttaaaggattaaattggggtgaaaattaataagag 38119776  T
Q  214 gacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
    ||| ||||  |||||||||||||||||||  ||| |||| |||||||    
T  38119775 gaccaaattaaaatttcataattatttaaaagaccatttatataatt 38119729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 43713121 - 43713224
Alignment:
Q  143 ttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaa 242  Q
    ||||| |||||||||||  || |  |||||||||||||||||||||||||||||| ||||| || |||| |||  |||| ||||||||||||||||||||    
T  43713121 ttaacggaatggatttatttggttaacggaggtaacttaaaggaccaaaatgggacgaaaactattaaggggatcaaattgaaatttcataattatttaa 43713220  T
Q  243 ggga 246  Q
    ||||    
T  43713221 ggga 43713224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 28322837 - 28322728
Alignment:
Q  143 ttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaa 242  Q
    |||||| ||||||||||  |||| |||||||||||||||  |||||| |||||   ||||||||||||| |||  | || ||||| ||||||||||||||    
T  28322837 ttaacataatggatttatttgattgacggaggtaacttatgggaccataatggagggaaaattaataagtggatcatattgaaatctcataattatttaa 28322738  T
Q  243 gggacgattt 252  Q
    ||||| ||||    
T  28322737 gggactattt 28322728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 4629678 - 4629766
Alignment:
Q  158 taaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggac 247  Q
    |||| |||||||||||||||||| ||| ||  |||||||  ||||||||||||| |||| |||| ||||| || ||||||||||||||||    
T  4629678 taaaagatggacggaggtaacttgaag-acttaaatggggcgaaaattaataaggggactaaattgaaatctcctaattatttaagggac 4629766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 43711713 - 43711599
Alignment:
Q  138 aaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataatta 237  Q
    |||| |||||| ||||||||||  |||  |||||||||||||||  |||||| |||||   ||||||||||||  |||  | || ||||| |||||||||    
T  43711713 aaaatttaacataatggatttatttgactgacggaggtaacttatgggaccagaatggagcgaaaattaataaagggatcatattgaaatctcataatta 43711614  T
Q  238 tttaagggacgattt 252  Q
    |||||||||| ||||    
T  43711613 tttaagggaccattt 43711599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 26380656 - 26380830
Alignment:
Q  86 gtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaagg 185  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||| ||||| ||||||||||| |||||||    
T  26380656 gtttgaggatgaagttgatgtaggatgaagatgaatgttaatattttttaacaaaaattaacataatgaatttagatgatagacggaggtaaattaaagg 26380755  T
Q  186 accaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
    |||||||  || ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  26380756 accaaaaaagggtgaaaattaataagaggaccaaatcaaaatttcataattatttaagggacaatttgtataatt 26380830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 26379548 - 26379385
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 183  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||| ||| |||||    
T  26379548 gggtttgagaatgaagttgatgtaggaggaagatgaatgttaacattttttaacaaaagttaacataatagatttaaatgatgggcggagataaattaaa 26379449  T
Q  184 ggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggac 247  Q
    |||| ||||||||| |||||||||||||||| | ||||  ||||||||||||||||||||||||    
T  26379448 ggactaaaatgggacgaaaattaataagaggtccaaattaaaatttcataattatttaagggac 26379385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 28240725 - 28240866
Alignment:
Q  111 ggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataa 210  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28240725 ggaagatgaatgttaacagtttttcacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggacgaaaattaataa 28240824  T
Q  211 gaggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
    | |||| ||||  |||||||||||||||||||||||| ||||    
T  28240825 ggggaccaaattaaaatttcataattatttaagggaccattt 28240866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 28239508 - 28239367
Alignment:
Q  111 ggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataa 210  Q
    |||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||    
T  28239508 ggaagatgaatgttaacagtttttcacaaaagttaatagaatggatttaaatgatggacgtaggtaatttaaaggaccaaaatgggacgaaaattattaa 28239409  T
Q  211 gaggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
    | |||| |||| ||||| ||||||||||||||||||| ||||    
T  28239408 ggggaccaaattgaaatctcataattatttaagggaccattt 28239367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 3833689 - 3833513
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 183  Q
    |||||| ||||||||||||||| |  | ||||||||||||||| | ||||||  ||||  | || ||||| |||||| ||   ||| ||| |||||||||    
T  3833689 gggtttaaggatgaagttgatgaacaaagaagatgaatgttaacaatttttattaaaatctgacggaatgaatttaagtggcagacagagataacttaaa 3833590  T
Q  184 ggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
     ||| |||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||| | || |||||||    
T  3833589 tgactaaaatggggtgaaaattaataagaggactaaatcaaaatctcataattatttaagggaccaattatataatt 3833513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 26271710 - 26271631
Alignment:
Q  168 acggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggac 247  Q
    |||||||||||||||| |||||||||||||||||||||| |||  |||| |||| |||||||||||||||||||||||||    
T  26271710 acggaggtaacttaaatgaccaaaatgggatgaaaattattaaagggaccaaattgaaatttcataattatttaagggac 26271631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 5062072 - 5062240
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 183  Q
    |||||| ||||||||||||| | | ||  |||||||||||||| | |||| ||||||| ||||| ||||| |||||  |||   || |||||||||||      
T  5062072 gggtttaaggatgaagttgaagaatgaaaaagatgaatgttaacaattttgaacaaaaattaacggaatgaatttatttgactaacagaggtaacttatg 5062171  T
Q  184 ggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
    ||| || |||| |||||||||||||||| |||| |||  ||||| ||||||||||||||||||| ||||    
T  5062172 ggatcagaatgagatgaaaattaataaggggaccaaaatgaaatctcataattatttaagggaccattt 5062240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 36404276 - 36404351
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggattta 159  Q
    |||||||| ||||||||||||| ||||||||||||||||||||   |||| |||||||||||||||||||||||||    
T  36404276 gggtttgaagatgaagttgatgaaggaggaagatgaatgttaacggttttgaacaaaagttaacagaatggattta 36404351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 36681271 - 36681178
Alignment:
Q  88 ttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaactta 181  Q
    |||||||||||| ||||| ||||| |||||||||||||| |||||| |||||||||||||| ||||||||||  |||  |||||||| ||||||    
T  36681271 ttgaggatgaagatgatgaaggagaaagatgaatgttaacatttttgaacaaaagttaacataatggatttatttgactgacggaggaaactta 36681178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 36682269 - 36682389
Alignment:
Q  88 ttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggac 187  Q
    |||||||||||| ||||| ||||||||||||||||||||  ||||| |||||||||||| ||||||||||||  |||  |||||||  ||||||  ||||    
T  36682269 ttgaggatgaagatgatgaaggaggaagatgaatgttaacttttttgaacaaaagttaatagaatggatttatttgaccgacggagaaaacttatgggac 36682368  T
Q  188 caaaatgggatgaaaattaat 208  Q
    |||| ||  | ||||||||||    
T  36682369 caaactgaaacgaaaattaat 36682389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 36404039 - 36403966
Alignment:
Q  86 gtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggattta 159  Q
    |||||||||||||||||||| ||||||||||||||| ||||   |||| |||||||||||| ||||||||||||    
T  36404039 gtttgaggatgaagttgatgaaggaggaagatgaatattaacggttttgaacaaaagttaatagaatggattta 36403966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 5060880 - 5060731
Alignment:
Q  102 gatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaa 201  Q
    |||| ||||||||||||||||||||   |||| |||||||||||| | |||| |||||  |||  |||||| ||||||||  |||| | |||| || |||    
T  5060880 gatgaaggaggaagatgaatgttaacggttttgaacaaaagttaatataatg-atttatttgactgacggaagtaacttatgggactagaatgagacgaa 5060782  T
Q  202 aattaataagagga-caaaatcgaaatttcataattatttaagggacgattt 252  Q
    |||||||||| ||| |||||| ||||| ||||||||||||||||||| ||||    
T  5060781 aattaataaggggatcaaaat-gaaatctcataattatttaagggaccattt 5060731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 11384346 - 11384197
Alignment:
Q  111 ggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataa 210  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||| |||    
T  11384346 ggaagatgaatgttaacagtttttcacaaaagttaacagaatggatttaaatgatggacggaggtaatttaaaggaccgaaatggaacgaaaattattaa 11384247  T
Q  211 gaggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
      |||| |||| ||||| ||||||||||||||||||| |||| |||||||    
T  11384246 tgggaccaaattgaaatctcataattatttaagggaccatttatataatt 11384197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 11385616 - 11385756
Alignment:
Q  112 gaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataag 211  Q
    ||||||||||||||| | ||||| ||||||||||||| |||||||||||||||| || ||| |||||||||| ||||||||||||| ||||||||||||     
T  11385616 gaagatgaatgttaacagtttttcacaaaagttaacataatggatttaaatgatagagggatgtaacttaaaagaccaaaatgggacgaaaattaataaa 11385715  T
Q  212 aggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
     |||| |||| ||||| |||||||||||||| |||| ||||    
T  11385716 tggaccaaattgaaatctcataattatttaaaggaccattt 11385756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 1560206 - 1560074
Alignment:
Q  115 gatgaatgttaatatttttta-acaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagag 213  Q
    ||||||||||||  ||||||  |||| | |||||| ||||||||||| |||||||||||||||| ||||||||| ||| ||||  ||||||||||||| |    
T  1560206 gatgaatgttaacgttttttccacaagatttaacataatggatttaattgatggacggaggtaatttaaaggactaaattggggcgaaaattaataaggg 1560107  T
Q  214 gacaaaatcgaaatttcataattatttaaggga 246  Q
    ||  |||| ||||||||||||||||||||||||    
T  1560106 gatcaaattgaaatttcataattatttaaggga 1560074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 252
Target Start/End: Complemental strand, 44491902 - 44491732
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaa--tattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaactta 181  Q
    ||||||||  |||||||||||| ||||||||||||||| ||||  | |||||||  ||||  | || |||| ||||||| ||  |||| |||||||||||    
T  44491902 gggtttgaaaatgaagttgatgaaggaggaagatgaatcttaacgttttttttattaaaatctgacggaatagatttaagtggcggacagaggtaactta 44491803  T
Q  182 aaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
    ||||||||||||| |  ||||||||||||  |||| |||| ||||| ||||||||||||||||||| ||||    
T  44491802 aaggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatctcataattatttaagggaccattt 44491732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 44493168 - 44493271
Alignment:
Q  149 gaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacg 248  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||| |  ||||||||||||  |||| ||||  |||| |||||||||||||||||||     
T  44493168 gaatggatttaagtggcggacggaggtaacttaaaggaccaaaatgaggcgaaaattaataaagggaccaaattaaaatctcataattatttaagggacc 44493267  T
Q  249 attt 252  Q
    ||||    
T  44493268 attt 44493271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 21072132 - 21072236
Alignment:
Q  155 atttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgatttgt 254  Q
    |||||| || ||||||||||||| ||| ||||||| |||||   ||||||||||||| |||| ||   ||||| ||||||||| ||||||||| ||||||    
T  21072132 atttaagtggtggacggaggtaaattataggaccataatggagcgaaaattaataaggggaccaacatgaaatctcataattagttaagggactatttgt 21072231  T
Q  255 ataat 259  Q
     ||||    
T  21072232 gtaat 21072236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 29214109 - 29214034
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggattta 159  Q
    |||||||||||||||||||||| |||||||||||   ||||||  ||||| ||||||| |||||| ||| ||||||    
T  29214109 gggtttgaggatgaagttgatgaaggaggaagatacgtgttaacgtttttgaacaaaacttaacaaaatagattta 29214034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 29214965 - 29215022
Alignment:
Q  102 gatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggattta 159  Q
    |||| |||| |||||||||||||||| ||||| ||||||| ||||||||||| |||||    
T  29214965 gatgaaggaagaagatgaatgttaatgtttttgaacaaaacttaacagaatgaattta 29215022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 32133527 - 32133466
Alignment:
Q  199 gaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
    ||||||||||||| |||| | || ||||| ||||||||||||||||||| |||| |||||||    
T  32133527 gaaaattaataaggggaccatattgaaatctcataattatttaagggaccatttatataatt 32133466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 22970271 - 22970096
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 183  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||  ||||||||| ||| ||||  ||||| |||||| ||||| |||||||||| |||||    
T  22970271 gggtttgaggataaagtt-atgaaggaggaagatgaatgttaacgttttttaaccaaaattaatggaatgaatttaactgatgaacggaggtaatttaaa 22970173  T
Q  184 ggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
    |||||||| |||   ||||||||||||| || | |||| ||||||||||||||||||||||||| |||| |||||||    
T  22970172 ggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataatt 22970096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 260
Target Start/End: Original strand, 23818123 - 23818298
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 183  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||  ||||||||| ||| ||||  ||||| |||||| ||||| |||||||||| |||||    
T  23818123 gggtttgaggataaagtt-atgaaggaggaagatgaatgttaacgttttttaaccaaaattaatggaatgaatttaactgatgaacggaggtaatttaaa 23818221  T
Q  184 ggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
    |||||||| |||   ||||||||||||| || | |||| ||||||||||||||||||||||||| |||| |||||||    
T  23818222 ggaccaaattggagcgaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataatt 23818298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 22971413 - 22971524
Alignment:
Q  149 gaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacg 248  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||| |||    |||||||||||| |||| |||| |||||||||||||||||||||||||     
T  22971413 gaatggatttaattgatcgacggaggtaatttaaaagaccaaattggagcaaaaattaataaggggaccaaattgaaatttcataattatttaagggact 22971512  T
Q  249 atttgtataatt 260  Q
    |||| |||||||    
T  22971513 atttatataatt 22971524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 23816985 - 23816874
Alignment:
Q  149 gaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacg 248  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||| |||    |||||||||||| |||| |||| |||||||||||||||||||||||||     
T  23816985 gaatggatttaattgatcgacggaggtaatttaaaagaccaaattggagcaaaaattaataaggggaccaaattgaaatttcataattatttaagggact 23816886  T
Q  249 atttgtataatt 260  Q
    |||| |||||||    
T  23816885 atttatataatt 23816874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 48677972 - 48678123
Alignment:
Q  93 gatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaa 192  Q
    |||||| |||||| | |||||||||||||||||| ||||||||  ||||  | || |||||||||||| || ||||||||| ||||||||| ||||||||    
T  48677972 gatgaatttgatgaatgaggaagatgaatgttaacattttttattaaaatatgacggaatggatttaagtggtggacggagataacttaaatgaccaaaa 48678071  T
Q  193 tgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagg 244  Q
    |||   ||||||||||||  |||| |||||||||| ||||||||||||||||    
T  48678072 tggagcgaaaattaataaagggaccaaatcgaaatctcataattatttaagg 48678123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 48571743 - 48571817
Alignment:
Q  85 ggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggattta 159  Q
    |||||||||||||| ||||||  |||||||||||||||||||  ||||| ||||||| |||| |||||| |||||    
T  48571743 ggtttgaggatgaaattgatgatggaggaagatgaatgttaacgtttttgaacaaaacttaatagaatgaattta 48571817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 48676981 - 48676937
Alignment:
Q  199 gaaaattaataagaggacaaaatcgaaatttcataattatttaag 243  Q
    |||||||||||||||||  |||||||||| |||||||||||||||    
T  48676981 gaaaattaataagaggatgaaatcgaaatctcataattatttaag 48676937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 38525654 - 38525822
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaa 183  Q
    |||||| ||||||||||||||| ||||||||||||||||||||   |||| |||||||||||||||||||||||||  |||  |||||||| || ||| |    
T  38525654 gggtttaaggatgaagttgatgaaggaggaagatgaatgttaacggttttgaacaaaagttaacagaatggatttatttgactgacggaggaaatttata 38525753  T
Q  184 ggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
    |||||| | ||  |  ||||||| |||| |||| |||  ||||| ||||||||| ||||||||| ||||    
T  38525754 ggaccatattgaaacaaaaattactaaggggaccaaaatgaaatctcataattagttaagggaccattt 38525822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 2766408 - 2766275
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgtt-aatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaa 182  Q
    |||||||| ||||||||||||| |||||||||||||||||| || ||||||| |  ||| || || |||| ||||||| || |||||  |||||| ||||    
T  2766408 gggtttgaagatgaagttgatgaaggaggaagatgaatgttaaacattttttgatgaaaattgacggaatagatttaattggtggacacaggtaatttaa 2766309  T
Q  183 aggaccaaaatgggatgaaaattaataagaggac 216  Q
     ||||||||||| |  ||||||||||||| ||||    
T  2766308 gggaccaaaatgaggcgaaaattaataaggggac 2766275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 38524515 - 38524365
Alignment:
Q  102 gatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaa 201  Q
    |||| ||||||||||||||||||||   |||| |||||||||||||||||||||||||  |||  |||||||| || |||  |||||| | ||| |  ||    
T  38524515 gatgaaggaggaagatgaatgttaacggttttgaacaaaagttaacagaatggatttatttgactgacggaggaaatttatgggaccatattggaacaaa 38524416  T
Q  202 aattaataagaggacaaaatcgaaatttcataattatttaagggacgattt 252  Q
    ||||| |||  |||| |||  ||||| ||||||||| ||||||||| ||||    
T  38524415 aattattaatgggaccaaaatgaaatctcataattagttaagggaccattt 38524365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 2767154 - 2767279
Alignment:
Q  84 gggtttgaggatgaagttgatgtaggaggaagatgaatgttaatat-tttttaacaaaagttaacagaatggatttaaatgatggacggaggtaacttaa 182  Q
    |||||||||||| ||||||||| |||| |||||||||||||||  | ||||||| |||| || |  |||||||||||| ||  |||| ||||||| ||||    
T  2767154 gggtttgaggattaagttgatgaaggaagaagatgaatgttaacgtctttttaataaaa-ttgaaggaatggatttaagtggcggacagaggtaatttaa 2767252  T
Q  183 aggaccaaaatgggatgaaaattaata 209  Q
    |||| ||||||| |  |||||||||||    
T  2767253 aggatcaaaatgaggcgaaaattaata 2767279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 2753270 - 2753311
Alignment:
Q  85 ggtttgaggatgaagttgatgtaggaggaagatgaatgttaa 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  2753270 ggtttgaggatgaagttgatgaaggaggaagatgaatgttaa 2753311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 45512562 - 45512679
Alignment:
Q  143 ttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaa 242  Q
    |||||| ||||||||||  |||| |||||||||||||||   ||||| ||||||  |||| |||||||| ||   | || ||||| ||||||||||||||    
T  45512562 ttaacaaaatggatttatttgattgacggaggtaacttatgagaccagaatggggcgaaagttaataagggggtcatattgaaatctcataattatttaa 45512661  T
Q  243 gggacgatttgtataatt 260  Q
    ||||| |||| |||||||    
T  45512662 gggaccatttatataatt 45512679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 45511145 - 45511042
Alignment:
Q  143 ttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaa 242  Q
    ||||||||||| |||||  |||  |||||||||||||||  | || |||||| |  ||||||||||||  |||| | || ||||| ||||||||||||||    
T  45511145 ttaacagaatgaatttatttgactgacggaggtaacttatggaactaaaatgaggcgaaaattaataaagggaccatattgaaatctcataattatttaa 45511046  T
Q  243 ggga 246  Q
    ||||    
T  45511045 ggga 45511042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 2753331 - 2753376
Alignment:
Q  166 ggacggaggtaacttaaaggaccaaaatgggatgaaaattaataag 211  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||    
T  2753331 ggacggaggtaatttaaaggaccaaaatgaggcgaaaattaataag 2753376  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 260
Target Start/End: Original strand, 35238022 - 35238169
Alignment:
Q  114 agatgaatgttaatatttttta-acaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataaga 212  Q
    |||||||||||||| ||||||  |||| | |||||||||||||||||| |||||||||||||||| ||||||| ||||  | | | |||||||||||| |    
T  35238022 agatgaatgttaatttttttttcacaagatttaacagaatggatttaattgatggacggaggtaatttaaagggccaatttagaacgaaaattaataaaa 35238121  T
Q  213 ggacaaaatcgaaatttcataattatttaagggacgatttgtataatt 260  Q
    |||  |||| ||||||| |||||||||||||| || |||| |||||||    
T  35238122 ggatcaaattgaaattttataattatttaaggaaccatttatataatt 35238169  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 8284909 - 8285010
Alignment:
Q  146 acagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggatgaaaattaataagaggacaaaatcgaaatttcataattatttaaggg 245  Q
    ||||||||||||||| |||||||||||| ||| |||||||| |||| ||||  ||||||||||||| |||| ||||  ||||||||||||||||||||||    
T  8284909 acagaatggatttaattgatggacggagataatttaaaggatcaaattggggcgaaaattaataaggggaccaaattaaaatttcataattatttaaggg 8285008  T
Q  246 ac 247  Q
    ||    
T  8285009 ac 8285010  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 35237410 - 35237292
Alignment:
Q  143 ttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatg-ggatgaaaattaataagaggacaaaatcgaaatttcataattattta 241  Q
    ||||||||||| |||||  ||||||||||| |||| ||||| || |||| || ||  ||||||||||||  |||| |||| ||||||||||||||| |||    
T  35237410 ttaacagaatgaatttagttgatggacggaagtaatttaaaagatcaaattgagggcgaaaattaataaagggactaaattgaaatttcataattactta 35237311  T
Q  242 agggacgatttgtataatt 260  Q
    || ||| |||| |||||||    
T  35237310 agagaccatttatataatt 35237292  T

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Target: scaffold0912 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 1773 - 1703
Alignment:
Q  89 tgaggatgaagttgatgtaggaggaagatgaatgttaatattttttaacaaaagttaacagaatggattta 159  Q
    ||||||||||  ||||| || |||||||| ||||||||   |||| ||||||||||||||||||| |||||    
T  1773 tgaggatgaatatgatgaagaaggaagattaatgttaacgcttttgaacaaaagttaacagaatgaattta 1703  T

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