View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17781_low_13 (Length: 267)

Name: NF17781_low_13
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17781_low_13
NF17781_low_13
[»] scaffold0007 (3 HSPs)
scaffold0007 (146-258)||(258448-258560)
scaffold0007 (1-91)||(258692-258782)
scaffold0007 (92-133)||(258618-258659)
[»] chr3 (6 HSPs)
chr3 (146-258)||(14174504-14174616)
chr3 (1-91)||(951730-951820)
chr3 (178-258)||(951896-951976)
chr3 (1-76)||(14174280-14174355)
chr3 (92-147)||(14174405-14174458)
chr3 (4-42)||(14174358-14174396)
[»] chr7 (3 HSPs)
chr7 (146-258)||(40723493-40723606)
chr7 (1-91)||(40723738-40723828)
chr7 (92-147)||(40723652-40723705)
[»] chr2 (1 HSPs)
chr2 (155-210)||(2193526-2193581)


Alignment Details
Target: scaffold0007 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 258560 - 258448
Alignment:
Q  146 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatagttatagaaacatattgaaagagaaataacaccttc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  258560 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatagttataaaaacagattgaaagagaaataacaccttc 258461  T
Q  246 cacaaagtataat 258  Q
    |||||||||||||    
T  258460 cacaaagtataat 258448  T

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Target: scaffold0007; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 258782 - 258692
Alignment:
Q  1 ccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagagatccatggtgattacaataatttttaaac 91  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  258782 ccataagtgtgtaagaaagattcattcacactatcatttgattagttaaaacgtcaaaagagatccatggtgattacaataatttttaaac 258692  T

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Target: scaffold0007; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 258659 - 258618
Alignment:
Q  92 acatttagattttagataatcaacttcaaaatttggggataa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  258659 acatttagattttagataatcaacttcaaaatttggggataa 258618  T

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Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 14174504 - 14174616
Alignment:
Q  146 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatagttatagaaacatattgaaagagaaataacaccttc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  14174504 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatagttatagaaatagattgaaagagaaataacaccttc 14174603  T
Q  246 cacaaagtataat 258  Q
    |||||||||||||    
T  14174604 cacaaagtataat 14174616  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 951730 - 951820
Alignment:
Q  1 ccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagagatccatggtgattacaataatttttaaac 91  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  951730 ccataagtgcgtaagaaagattcattcacactatcatctgattggttaaaacgtcaaaagagatccatggtgattacaataatttttaaac 951820  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 951896 - 951976
Alignment:
Q  178 gaaaagtaatattcaaaatgtttttcagcatagttatagaaacatattgaaagagaaataacaccttccacaaagtataat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  951896 gaaaagtaatattcaaaatgtttttcagcatagttatagaaacaaattgaaagagaaataacaccttccacaaagtataat 951976  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14174280 - 14174355
Alignment:
Q  1 ccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagagatccatggtgatta 76  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  14174280 ccataagtgcgtaagaaagattcattcacactatcatctgattagttaaaacgtcaaaaaaggtccatggtgatta 14174355  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 14174405 - 14174458
Alignment:
Q  92 acatttagattttagataatcaacttcaaaatttggggataataatttatctctca 147  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  14174405 acatttagattttagataatcaacttcaaaatttggggata--aatttatctctca 14174458  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 14174358 - 14174396
Alignment:
Q  4 taagtgggtaagaaagattcattcacactatcatctgat 42  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  14174358 taagtgcgtaagaaagattcattcacactatcatctgat 14174396  T

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Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 40723606 - 40723493
Alignment:
Q  146 caaaagatataaaggattcccatttgaatgaagaaaagtaatattcaaaatgt--ttttcagcatagttatagaaacatattgaaagagaaataacacct 243  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||| ||    
T  40723606 caaaagatataaaggatttccattttaatgaagaaaagtaatattcaaaatgtttttttcagcatagttatagaaacagattgaaagagaaataaca-ct 40723508  T
Q  244 tccacaaagtataat 258  Q
    |||||||||||||||    
T  40723507 tccacaaagtataat 40723493  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 40723828 - 40723738
Alignment:
Q  1 ccataagtgggtaagaaagattcattcacactatcatctgattagttaatacgtcaaaagagatccatggtgattacaataatttttaaac 91  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  40723828 ccataagtgcgtaagaaagattcattcacactatcatttgattagttaaaacgtcaaaagagatccatggtgattacaatcatttttaaac 40723738  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 40723705 - 40723652
Alignment:
Q  92 acatttagattttagataatcaacttcaaaatttggggataataatttatctctca 147  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  40723705 acatttagattttagataatcaacttcaaaatatggggata--aatttatctctca 40723652  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 2193526 - 2193581
Alignment:
Q  155 taaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag 210  Q
    ||||||||||  ||||||||||||| |||||  |||||||||||||||| ||||||    
T  2193526 taaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag 2193581  T

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