View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17781_low_15 (Length: 252)
Name: NF17781_low_15
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17781_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 43214159 - 43214401
Alignment:
| Q |
1 |
aaattacagcaatactggtctgggagtgcaatcaataaaaacaaagggatggtggagaatttgcagaattatggaataatcaaatctagaaaggtagctg |
100 |
Q |
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| T |
43214159 |
aaattacagcaatactggtctgggagtgcaatcaataaaaacaaagggatggtggagaatttgcagaattatggaataatcaaatctagaaaggtagctg |
43214258 |
T |
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| Q |
101 |
aaacaatggaaaacattgacagaggtgtatttgtacccaacggggcgcaaccttacattgacagccccatggctataggctacaatgccactatatctgc |
200 |
Q |
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| T |
43214259 |
aaacaatggaaaacattgacagaggtgtatttgtacccaacggggcgcaaccttacattgacagccccatggctataggctacaatgccactatatctgc |
43214358 |
T |
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| Q |
201 |
accacacatgcatgcaatctgccttcagttgctcgagaattat |
243 |
Q |
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| T |
43214359 |
accacacatgcatgcaatctgccttcagttgctcgagaattat |
43214401 |
T |
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Back To:
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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 34367913 - 34367990
Alignment:
| Q |
159 |
tgacagccccatggctataggctacaatgccactatatctgcaccacacatgcatgcaatctgccttcagttgctcga |
236 |
Q |
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| T |
34367913 |
tgacagccccatggccataggctacaatgccaccatatctgcacctcacatgcatgctacctgccttcacttgctcga |
34367990 |
T |
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