View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17781_low_16 (Length: 249)

Name: NF17781_low_16
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17781_low_16
NF17781_low_16
[»] chr2 (18 HSPs)
chr2 (100-172)||(32227430-32227502)
chr2 (103-173)||(32656238-32656308)
chr2 (45-98)||(22387782-22387835)
chr2 (106-170)||(43305459-43305523)
chr2 (100-170)||(45075650-45075720)
chr2 (99-171)||(25904825-25904897)
chr2 (100-167)||(33830328-33830395)
chr2 (110-167)||(12497271-12497328)
chr2 (100-169)||(14776270-14776339)
chr2 (110-170)||(6590669-6590729)
chr2 (100-171)||(40534216-40534287)
chr2 (102-171)||(35327862-35327930)
chr2 (100-171)||(30326140-30326211)
chr2 (99-166)||(35310195-35310262)
chr2 (102-168)||(15137491-15137556)
chr2 (100-137)||(41766314-41766351)
chr2 (120-172)||(11941488-11941540)
chr2 (73-101)||(16192977-16193005)
[»] chr4 (20 HSPs)
chr4 (100-171)||(22409437-22409508)
chr4 (100-182)||(10109204-10109286)
chr4 (100-171)||(30538034-30538105)
chr4 (99-170)||(14136668-14136739)
chr4 (108-169)||(26533206-26533267)
chr4 (100-168)||(53039489-53039557)
chr4 (109-171)||(50533264-50533326)
chr4 (100-143)||(24010296-24010339)
chr4 (100-171)||(32318512-32318582)
chr4 (100-142)||(18995275-18995317)
chr4 (100-170)||(26889965-26890035)
chr4 (110-171)||(17268893-17268954)
chr4 (100-168)||(38793721-38793789)
chr4 (100-168)||(4960462-4960534)
chr4 (100-170)||(41069106-41069176)
chr4 (100-168)||(41460645-41460712)
chr4 (100-163)||(20574967-20575030)
chr4 (100-167)||(32055112-32055179)
chr4 (133-165)||(47732975-47733007)
chr4 (131-175)||(50328345-50328389)
[»] chr1 (13 HSPs)
chr1 (100-171)||(3491520-3491591)
chr1 (100-171)||(298195-298266)
chr1 (100-166)||(47588496-47588562)
chr1 (100-167)||(21276648-21276715)
chr1 (100-167)||(5198793-5198860)
chr1 (100-171)||(8550400-8550471)
chr1 (104-167)||(42596900-42596963)
chr1 (100-142)||(4051706-4051748)
chr1 (99-171)||(27211298-27211370)
chr1 (100-167)||(38788955-38789021)
chr1 (114-170)||(15881223-15881278)
chr1 (110-170)||(2614797-2614857)
chr1 (132-168)||(32544771-32544807)
[»] chr8 (18 HSPs)
chr8 (107-168)||(11257854-11257915)
chr8 (100-169)||(37456122-37456191)
chr8 (100-171)||(30069810-30069881)
chr8 (100-157)||(7107539-7107596)
chr8 (99-168)||(41128125-41128194)
chr8 (100-147)||(8072547-8072594)
chr8 (108-171)||(17867438-17867501)
chr8 (100-169)||(40651605-40651675)
chr8 (100-173)||(2539829-2539901)
chr8 (110-175)||(24991719-24991785)
chr8 (108-157)||(6393550-6393599)
chr8 (38-91)||(9929879-9929932)
chr8 (100-169)||(38869754-38869823)
chr8 (113-173)||(36068021-36068081)
chr8 (100-170)||(31410866-31410935)
chr8 (108-169)||(16037278-16037339)
chr8 (112-169)||(38730170-38730227)
chr8 (100-140)||(1042814-1042854)
[»] chr3 (19 HSPs)
chr3 (100-169)||(36923615-36923684)
chr3 (100-171)||(28451825-28451896)
chr3 (100-167)||(50699824-50699891)
chr3 (100-173)||(43310336-43310409)
chr3 (101-164)||(50360645-50360708)
chr3 (106-172)||(972406-972472)
chr3 (38-91)||(27982338-27982391)
chr3 (99-170)||(21290237-21290308)
chr3 (112-170)||(37238886-37238944)
chr3 (100-169)||(12568716-12568785)
chr3 (100-169)||(13545180-13545249)
chr3 (100-169)||(13863699-13863767)
chr3 (100-171)||(7681650-7681721)
chr3 (100-167)||(21490370-21490437)
chr3 (100-151)||(28945837-28945888)
chr3 (99-142)||(52378597-52378640)
chr3 (100-169)||(38773508-38773577)
chr3 (133-169)||(30578750-30578786)
chr3 (107-143)||(46748920-46748956)
[»] chr7 (17 HSPs)
chr7 (100-168)||(39854198-39854265)
chr7 (100-171)||(41888901-41888972)
chr7 (106-167)||(38652745-38652806)
chr7 (103-171)||(14761854-14761922)
chr7 (100-176)||(17874714-17874790)
chr7 (107-171)||(38073687-38073751)
chr7 (100-145)||(33955912-33955957)
chr7 (38-91)||(37782797-37782850)
chr7 (110-171)||(45278695-45278756)
chr7 (113-169)||(11666699-11666755)
chr7 (100-168)||(21148389-21148457)
chr7 (112-168)||(8073654-8073710)
chr7 (100-168)||(20884567-20884635)
chr7 (119-171)||(37391032-37391084)
chr7 (100-167)||(6647514-6647581)
chr7 (100-155)||(6727139-6727194)
chr7 (133-165)||(20884454-20884486)
[»] chr5 (12 HSPs)
chr5 (27-99)||(27344577-27344649)
chr5 (103-171)||(17566686-17566754)
chr5 (28-91)||(15561997-15562060)
chr5 (110-170)||(32135804-32135864)
chr5 (110-149)||(2903368-2903407)
chr5 (102-169)||(10333780-10333847)
chr5 (100-170)||(21369110-21369180)
chr5 (100-169)||(42656011-42656080)
chr5 (100-171)||(5402802-5402873)
chr5 (106-173)||(25836906-25836973)
chr5 (131-173)||(32632389-32632431)
chr5 (110-170)||(3344982-3345042)
[»] scaffold0154 (1 HSPs)
scaffold0154 (100-171)||(36440-36511)
[»] scaffold1157 (1 HSPs)
scaffold1157 (100-170)||(1973-2043)
[»] chr6 (8 HSPs)
chr6 (99-157)||(32785872-32785930)
chr6 (111-172)||(154182-154243)
chr6 (100-169)||(31767781-31767850)
chr6 (100-168)||(9464533-9464601)
chr6 (100-150)||(34396220-34396270)
chr6 (101-149)||(33972699-33972748)
chr6 (99-165)||(3213749-3213815)
chr6 (107-167)||(17506419-17506479)
[»] scaffold0007 (1 HSPs)
scaffold0007 (103-171)||(260405-260473)
[»] scaffold0102 (1 HSPs)
scaffold0102 (100-172)||(21228-21300)
[»] scaffold0061 (1 HSPs)
scaffold0061 (111-164)||(3562-3615)
[»] scaffold0017 (1 HSPs)
scaffold0017 (111-164)||(130539-130592)
[»] scaffold0014 (1 HSPs)
scaffold0014 (133-165)||(100016-100048)
[»] scaffold0008 (1 HSPs)
scaffold0008 (133-169)||(240561-240597)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 32227502 - 32227430
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcccta 172  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||||    
T  32227502 aattttcaatacataatttctattagtagaattcttaacatatgccctaagggcacatgttaacatttcccta 32227430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 32656308 - 32656238
Alignment:
Q  103 tttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccctaa 173  Q
    ||||||||||| ||||||||||||  |||||||||||||| |||||||||||||| |||||||||| ||||    
T  32656308 tttcaatacatgatttctattagtgaaattcttaacatgtgccctaagggcacaagttaacatttctctaa 32656238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 22387835 - 22387782
Alignment:
Q  45 taattcatggttcaccatgaaccacatggttggtggttcaccctagacatcacc 98  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  22387835 taattcatggttcagcatgaaccacatggttggtggttcaccttagacatcacc 22387782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 43305523 - 43305459
Alignment:
Q  106 caatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||| ||||||||    
T  43305523 caatacataatttctattagtagaattattaacatgtgccctaaggacacaagttatcatttccc 43305459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 45075720 - 45075650
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||||||||||||| |||||||  |||| |||||||||| ||||| | ||||||||||||||||||    
T  45075720 aattttcaatacataatttatattagtgaaatttttaacatgtatcctaaagacacaaattaacatttccc 45075650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 25904897 - 25904825
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    |||||||||| ||||||||||||| |||  ||||||||||||||  |||||| | ||||||||||||||||||    
T  25904897 taattttcaagacataatttctatcagtgaaattcttaacatgtgacctaagagtacaaattaacatttccct 25904825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 33830328 - 33830395
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||  |||||||| || |||||||||    
T  33830328 aatttccaatacataatttctattagtaaaattcttaacatatactataagggcataagttaacattt 33830395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 12497328 - 12497271
Alignment:
Q  110 acataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    |||| |||||||||||  |||||||||||||||  |||||||||||||||||||||||    
T  12497328 acatgatttctattagcggaattcttaacatgtgtcctaagggcacaaattaacattt 12497271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 14776339 - 14776270
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    |||||||||||||||||| ||| || || |||||||||||||| | |||| ||||||| |||||||||||    
T  14776339 aattttcaatacataattactaatattaaaattcttaacatgtgctctaatggcacaagttaacatttcc 14776270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 6590669 - 6590729
Alignment:
Q  110 acataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||||||||||| |||| ||||||||||  | ||||||||||| ||||||||||||    
T  6590669 acataatttctattagtggaatccttaacatgtgtcataagggcacaagttaacatttccc 6590729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 40534287 - 40534216
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||||||||||| |||| | |||||| ||||||||||| ||||||||||  | |||| |||||||||||||    
T  40534287 aattttcaatacacaattacgattagtggaattcttaacttgtaccctaaatgtacaagttaacatttccct 40534216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 35327862 - 35327930
Alignment:
Q  102 ttttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||||||||| |||| |||||||| |||||||| ||||||  | ||||||||||| |||||||||||||    
T  35327862 ttttcaatacacaattactattagtggaattctt-acatgtgtcttaagggcacaagttaacatttccct 35327930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 30326140 - 30326211
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||||||||||||||||||| ||| |  |||||||||||| ||| ||| || ||||  |||||||||||||    
T  30326140 aattttcaatacataatttctcttaatgaaattcttaacatatacgctacggacacaggttaacatttccct 30326211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 35310262 - 35310195
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatt 166  Q
    |||||| |||| ||||||||  |||| | ||||||||| ||||| |||||||||||||| ||||||||    
T  35310262 taatttccaatgcataattttcattattggaattcttatcatgtgccctaagggcacaagttaacatt 35310195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 15137491 - 15137556
Alignment:
Q  102 ttttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    ||||||||||||||||||||||| |  |||| |||||||||| | |||||| | |||||||||||||    
T  15137491 ttttcaatacataatttctatta-tgaaatttttaacatgtatcataagggtataaattaacatttc 15137556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 41766351 - 41766314
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaa 137  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  41766351 aattttcaatacataatttatattagtagaatttttaa 41766314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 11941540 - 11941488
Alignment:
Q  120 tattagtagaattcttaacatgtaccctaagggcacaaattaacatttcccta 172  Q
    |||||||  ||| |||||||||| |||||| ||||||| ||||||||||||||    
T  11941540 tattagtgtaatccttaacatgtgccctaaaggcacaagttaacatttcccta 11941488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 16192977 - 16193005
Alignment:
Q  73 gttggtggttcaccctagacatcacctaa 101  Q
    |||||||||||||||||||||||||||||    
T  16192977 gttggtggttcaccctagacatcacctaa 16193005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 22409437 - 22409508
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  22409437 aatttccaatacatgatttctattagtagaattcttaacatgtgccctaagggcacaagttaacatttccct 22409508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 10109286 - 10109204
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccctaactataaata 182  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||||  |||||||    
T  10109286 aattttcaatacataatttctattagtggaattcttaatatgtgccctaaggacacaagttaacatttccctaaaaataaata 10109204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 30538034 - 30538105
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||||||||||||||||||||||| | ||||||||||||||||  ||||||| ||||||||||||||||||    
T  30538034 aattttcaatacataatttctattaatggaattcttaacatgtattctaagggtacaaattaacatttccct 30538105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 14136668 - 14136739
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||    
T  14136668 taatttccaatacatgatttctattagtagaattcttaacatataccttaagggcacaagttagcatttccc 14136739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 26533206 - 26533267
Alignment:
Q  108 atacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||    
T  26533206 atacataatttctattagtggaattcttaacatgtgccataagggcacaagttaacatttcc 26533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 53039489 - 53039557
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||| |||| |||||| ||||||||||    
T  53039489 aattatcaatacataatttctattagtgaaattcttaacatgtaccttaagagcacaagttaacatttc 53039557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 50533326 - 50533264
Alignment:
Q  109 tacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||    
T  50533326 tacatgatttctattaatagaattcttaacatgtaccctaagggaacaagttaatatttccct 50533264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 24010296 - 24010339
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgta 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  24010296 aattttcaatacataatttctattagtggaattcttaacatgta 24010339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 32318582 - 32318512
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||||||||||||||||||||||| |  ||||||||||||||   |||||||||||| |||||||||||||    
T  32318582 aattttcaatacataatttctattaatgaaattcttaacatgt-ggctaagggcacaagttaacatttccct 32318512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 18995275 - 18995317
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgt 142  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  18995275 aattttcgatacataatttctattagtagaattcttaacatgt 18995317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 26889965 - 26890035
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||| | |||||||||||||||||  ||| |||||||||| |||||||| ||||| ||||||||||||    
T  26889965 aattttcgagacataatttctattagtgaaatccttaacatgtgccctaaggacacaagttaacatttccc 26890035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 17268893 - 17268954
Alignment:
Q  110 acataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||  ||| |||||||||||||    
T  17268893 acataatttctattaatagaattcttaacatgtgccctaaaggttcaagttaacatttccct 17268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 38793789 - 38793721
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    ||||| ||||||| |||| |||||||| ||||||||||||||   ||||||||||||| ||||||||||    
T  38793789 aatttacaatacacaattactattagtggaattcttaacatgagtcctaagggcacaagttaacatttc 38793721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 4960462 - 4960534
Alignment:
Q  100 aattttcaatacataatttctattagtagaattc----ttaacatgtaccctaagggcacaaattaacatttc 168  Q
    |||||||||||| |||||||||||||| ||||||    ||||||||| |||||||| ||||| ||||||||||    
T  4960462 aattttcaatacgtaatttctattagtggaattcattcttaacatgtgccctaaggacacaagttaacatttc 4960534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 41069106 - 41069176
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||| |||||||||||||||||| ||||||| |||||   | ||||||||||  ||||||||||||    
T  41069106 aattttcaaaacataatttctattagtaaaattctttacatgggtcttaagggcacatgttaacatttccc 41069176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 41460645 - 41460712
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    |||||| |||||||| ||||||||| | |||||||||||||||  ||||| ||||||| ||||||||||    
T  41460645 aatttttaatacata-tttctattactggaattcttaacatgtgtcctaaaggcacaagttaacatttc 41460712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 20574967 - 20575030
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaac 163  Q
    ||||| ||||||| ||||  ||||| | ||||||||||||||| |||||||| |||||||||||    
T  20574967 aatttccaatacacaattattattaatggaattcttaacatgtgccctaaggacacaaattaac 20575030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 32055112 - 32055179
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||||| ||||||||||||||||| | ||||  ||||||||| |  ||||||||||| |||||||||    
T  32055112 aattttcgatacataatttctattaatggaatctttaacatgtgctttaagggcacaagttaacattt 32055179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 47732975 - 47733007
Alignment:
Q  133 cttaacatgtaccctaagggcacaaattaacat 165  Q
    |||||||||||||||||| ||||||||||||||    
T  47732975 cttaacatgtaccctaagagcacaaattaacat 47733007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 50328389 - 50328345
Alignment:
Q  131 ttcttaacatgtaccctaagggcacaaattaacatttccctaact 175  Q
    |||||||||||| |||| |||||||||||||||| | ||||||||    
T  50328389 ttcttaacatgtgcccttagggcacaaattaacactaccctaact 50328345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 3491520 - 3491591
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| ||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||    
T  3491520 aatttccaatacataatttctattagtggaattcttaacatttgccctaagggcacaagttaacatttccct 3491591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 298266 - 298195
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| ||||||| |||| |||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  298266 aatttccaatacacaattactattagtggaattcttaacatgtgccctaagggcacaagttaacatttccct 298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 47588496 - 47588562
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatt 166  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||| ||||||||    
T  47588496 aattttcaatacatagtttctattagtagaattcttaacatgtgctcttagggcacaagttaacatt 47588562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 21276648 - 21276715
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||| |||| ||||    
T  21276648 aattttcaatacataatttctattagtggaattcttatcatgtgccctaaggacacaagttaatattt 21276715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 5198860 - 5198793
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |  ||||| |||| |||||||||    
T  5198860 aatttccaatacataatttctattagtagaattcttaacatgtgtcacaagggtacaagttaacattt 5198793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 8550400 - 8550471
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |  | || |||||||| |||||||||||||    
T  8550400 aatttccaatacataatttctattagtggaattcttaacatatgtcatacgggcacaagttaacatttccct 8550471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 42596963 - 42596900
Alignment:
Q  104 ttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||||| || |||||||||||| |||||||||||||||||| | ||||||||| |||||||||    
T  42596963 ttcaatatatgatttctattagtggaattcttaacatgtaccatgagggcacaagttaacattt 42596900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 4051706 - 4051748
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgt 142  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  4051706 aattttcaatatataatttctattagtagaattcttaacatgt 4051748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 27211370 - 27211298
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    |||||||| ||||||||||||||||||| ||||  | |||||||||| |||||||| || |||| ||||||||    
T  27211370 taattttcgatacataatttctattagtggaatcttgaacatgtaccttaagggcataagttaatatttccct 27211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 38788955 - 38789021
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||| |||||||||||| ||||||||| |||||||||||| || | ||||||||||| |||||||||    
T  38788955 aatttccaatacataattactattagtaaaattcttaacatata-cttaagggcacaagttaacattt 38789021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 15881223 - 15881278
Alignment:
Q  114 aatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||||| |||||| |||||||||| |||||||||||||| ||| ||||||||    
T  15881223 aatttctattattagaat-cttaacatgtgccctaagggcacaagttatcatttccc 15881278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 2614857 - 2614797
Alignment:
Q  110 acataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||| ||||| | |||| |||||||| | |||||||| ||||| ||||||||||||    
T  2614857 acataatttttattaatggaatccttaacatatgccctaaggacacaagttaacatttccc 2614797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 32544807 - 32544771
Alignment:
Q  132 tcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  32544807 tcttaacatgtgccctaagggcacaagttaacatttc 32544771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 11257915 - 11257854
Alignment:
Q  107 aatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  11257915 aatacataatttctattagtggaattcttaacatgtgccctaagggcacaagttaacatttc 11257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 37456122 - 37456191
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||| ||||||||||||||||||||| |||||||||||| || |||||||||||||| ||| |||||||    
T  37456122 aatttccaatacataatttctattagtggaattcttaacacgtgccctaagggcacaagttagcatttcc 37456191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 30069810 - 30069881
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| ||||||| |||| |||||||| ||||||||||||||| || ||||||||||| |||||||||||||    
T  30069810 aatttccaatacacaattactattagtggaattcttaacatgtgccttaagggcacaagttaacatttccct 30069881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 7107539 - 7107596
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaa 157  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||    
T  7107539 aatttccaatacataatttctattagtggaattcttaacatgtgccataagggcacaa 7107596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 41128194 - 41128125
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    |||||||||||||||||||| ||||||| |||||||||| |||| |||| ||||| ||| ||||||||||    
T  41128194 taattttcaatacataatttatattagtggaattcttaatatgtgcccttagggcgcaagttaacatttc 41128125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 8072547 - 8072594
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccct 147  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  8072547 aattttcaatacataatttctattagtggaattcttaacatgtgccct 8072594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 17867501 - 17867438
Alignment:
Q  108 atacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||||||||||||||| |  |||||||||||||| || ||||| |||||||||||||||||||    
T  17867501 atacataatttctattaatgaaattcttaacatgtgccttaaggacacaaattaacatttccct 17867438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 40651675 - 40651605
Alignment:
Q  100 aattttcaatacataatttctattagtagaattctt-aacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||||||||||||||||| ||| | | |||||||| |||||||||||||| ||||||| |||||||||||    
T  40651675 aattttcaatacataatttttatcaatggaattctttaacatgtaccctaaaggcacaagttaacatttcc 40651605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 2539901 - 2539829
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccctaa 173  Q
    ||||||| | ||||||||||||||| || ||| |||||||||| || ||||||||||| |||||||||||||||    
T  2539901 aattttcgagacataatttctattaataaaat-cttaacatgtgccataagggcacaagttaacatttccctaa 2539829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 24991785 - 24991719
Alignment:
Q  110 acataatttctattagtagaat-tcttaacatgtaccctaagggcacaaattaacatttccctaact 175  Q
    |||||||||||||||||||||| | |||| |||| || ||| ||||||||||||||||||| |||||    
T  24991785 acataatttctattagtagaatcttttaatatgtgccataaaggcacaaattaacatttccttaact 24991719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 6393599 - 6393550
Alignment:
Q  108 atacataatttctattagtagaattcttaacatgtaccctaagggcacaa 157  Q
    |||||||||||||||||  |||||||||||||||| ||||||| ||||||    
T  6393599 atacataatttctattaacagaattcttaacatgtgccctaagtgcacaa 6393550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 9929879 - 9929932
Alignment:
Q  38 atggttttaattcatggttcaccatgaaccacatggttggtggttcaccctaga 91  Q
    |||||||| |||||||||||||||| |||||| | |||||||||||| ||||||    
T  9929879 atggtttttattcatggttcaccataaaccacttagttggtggttcatcctaga 9929932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 38869823 - 38869754
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    |||||| |||||||||||||||||||| | |||||||||||||  ||| | | || ||||||||||||||    
T  38869823 aatttttaatacataatttctattagtggcattcttaacatgtctccttaagacataaattaacatttcc 38869754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 36068081 - 36068021
Alignment:
Q  113 taatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccctaa 173  Q
    |||||| |||||||  ||||||||||||||  | ||||||||||| |||||||||||||||    
T  36068081 taatttttattagtgaaattcttaacatgtgtcataagggcacaagttaacatttccctaa 36068021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 31410935 - 31410866
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||| ||||| |||||| |||||| |||||||||||| ||||  ||| ||||||||| ||||||||||||    
T  31410935 aatttccaataaataattactattaatagaattcttaatatgt-gcctgagggcacaagttaacatttccc 31410866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 16037339 - 16037278
Alignment:
Q  108 atacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||||||||||||| ||| ||||||||||||||  || ||| |||||| |||| |||||||    
T  16037339 atacataatttctatcagtggaattcttaacatgagccataatggcacatattagcatttcc 16037278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 38730227 - 38730170
Alignment:
Q  112 ataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||||||||||| ||||||  ||||||||||| |||| ||||||| |||| ||||||    
T  38730227 ataatttctattaatagaatctttaacatgtactctaaaggcacaagttaatatttcc 38730170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 1042814 - 1042854
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacat 140  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  1042814 aattttcaatacataatttctattagtgaaatttttaacat 1042854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 36923615 - 36923684
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||| ||||||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||    
T  36923615 aatttccaatacataatttctattagtggaattcttaatatgtgccctaagagcacaaattaacatttcc 36923684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 28451825 - 28451896
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| ||||| ||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  28451825 aatttccaatatataatttttattagtggaattcttaacatgtgccctaagggcacaagttaacatttccct 28451896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 50699824 - 50699891
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  50699824 aatttccaatacatgatttctattagtggaattcttaacatgtgccctaagggcataaattaacattt 50699891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 43310409 - 43310336
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccctaa 173  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| | |||| ||||||| ||| |||||||||||    
T  43310409 aatttccaatacaaaatttctattagtagaattcttaacatgtgctctaaaggcacaagttagcatttccctaa 43310336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 50360708 - 50360645
Alignment:
Q  101 attttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaaca 164  Q
    |||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  50360708 attttcaatatataatttatattagtagaattcttaatatgtgccctaagggcacaagttaaca 50360645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 972472 - 972406
Alignment:
Q  106 caatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcccta 172  Q
    |||||| |||||| ||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||    
T  972472 caatacctaatttttattagtggaattcttaacatgtgccctaaggacacaagttaacatttcccta 972406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 27982391 - 27982338
Alignment:
Q  38 atggttttaattcatggttcaccatgaaccacatggttggtggttcaccctaga 91  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  27982391 atggtttttattcatggttcaccatgaaccacttagttggtggttcaccctaga 27982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 21290237 - 21290308
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    |||||| | ||||||||||||||||| | ||||  ||||||||| || ||||||||||||||||||||||||    
T  21290237 taatttccgatacataatttctattaatggaatatttaacatgtgccataagggcacaaattaacatttccc 21290308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 37238886 - 37238944
Alignment:
Q  112 ataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||||||| | ||||||||||||||| |||| ||||||||| ||||||||||||    
T  37238886 ataatttctattaatggaattcttaacatgtgcccttagggcacaagttaacatttccc 37238944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 12568716 - 12568785
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||| ||||| ||||||| ||||| |  |||||||||||||| |||||||||||||| |||||||||||    
T  12568716 aatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaacatttcc 12568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 13545180 - 13545249
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||| ||||| ||||||| ||||| |  |||||||||||||| |||||||||||||| |||||||||||    
T  13545180 aatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaacatttcc 13545249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 13863699 - 13863767
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||| ||||||| |||| |||||||| ||||||||||||||| |||||| ||||||| |||||||||||    
T  13863699 aatttccaatacacaattactattagtggaattcttaacatgtgccctaa-ggcacaagttaacatttcc 13863767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 7681650 - 7681721
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| ||||||| |||| ||||||||||||||| |||||| | | ||||| |||||| |||| ||||||||    
T  7681650 aatttccaatacacaattactattagtagaattcataacatatgctctaagagcacaagttaaaatttccct 7681721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 21490437 - 21490370
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||| ||||| ||||||| ||||||| ||||||||||||||| | |||||| ||||| |||| ||||    
T  21490437 aatttccaatatataatttatattagtggaattcttaacatgtgctctaaggacacaagttaatattt 21490370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 28945888 - 28945837
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagg 151  Q
    ||||| |||||||| |||| ||||||| ||||||||||||||| ||||||||    
T  28945888 aatttccaatacatgatttttattagtggaattcttaacatgtgccctaagg 28945837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 52378640 - 52378597
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgt 142  Q
    |||||||||||| |||||| |||||| |||||||||||||||||    
T  52378640 taattttcaataaataattgctattaatagaattcttaacatgt 52378597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 38773577 - 38773508
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||||||| ||| |||||| ||||||  ||||||||| |||| ||||||| |||| | |||||||||||    
T  38773577 aattttcaagacaaaatttccattagtgaaattcttaatatgtgccctaagagcacgagttaacatttcc 38773508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 30578786 - 30578750
Alignment:
Q  133 cttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    |||||||||| |||||||||||||| |||||||||||    
T  30578786 cttaacatgtgccctaagggcacaagttaacatttcc 30578750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 46748956 - 46748920
Alignment:
Q  107 aatacataatttctattagtagaattcttaacatgta 143  Q
    |||||||||||| |||||||| |||||||||||||||    
T  46748956 aatacataatttttattagtaaaattcttaacatgta 46748920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 39854198 - 39854265
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  39854198 aattttcaatacataatttatattagtagaattcttaacatgtgccctaa-ggcacaagttaacatttc 39854265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 41888901 - 41888972
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    |||||||||| ||| |||||||||| | ||||||||| ||||| |||||||||||||| |||||||||||||    
T  41888901 aattttcaatgcatgatttctattattggaattcttatcatgtgccctaagggcacaagttaacatttccct 41888972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 38652745 - 38652806
Alignment:
Q  106 caatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||  |||||| |||||||||    
T  38652745 caatacataatttctattagtggaattcttaacatgtgccctaaaagcacaagttaacattt 38652806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 14761854 - 14761922
Alignment:
Q  103 tttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    |||||||||| |||||||||||||||||||||||| |||| | |||| ||||||| ||| |||||||||    
T  14761854 tttcaatacaaaatttctattagtagaattcttaatatgtgcactaatggcacaagttatcatttccct 14761922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 17874714 - 17874790
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccctaacta 176  Q
    ||||||||||||||||||| ||||||| |||||||||| |||| ||||||||| |||| |||  |||||| ||||||    
T  17874714 aattttcaatacataatttatattagtggaattcttaatatgtgccctaagggtacaagttacgatttccttaacta 17874790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 38073687 - 38073751
Alignment:
Q  107 aatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    |||||||||||||||||||   ||| |||||||||| |||||||||||||| |||||||||||||    
T  38073687 aatacataatttctattagagaaatgcttaacatgtgccctaagggcacaagttaacatttccct 38073751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 33955957 - 33955912
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtacc 145  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  33955957 aattttcaatatataatttttattagtagaattcttaacatgtacc 33955912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 37782850 - 37782797
Alignment:
Q  38 atggttttaattcatggttcaccatgaaccacatggttggtggttcaccctaga 91  Q
    |||||||| |||||||||||||||| |||||| | |||||||||||||||||||    
T  37782850 atggtttttattcatggttcaccataaaccacttagttggtggttcaccctaga 37782797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 45278756 - 45278695
Alignment:
Q  110 acataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||| |||| ||||||||    
T  45278756 acataatttctattagtggaatccttaagatgtaccctaaggtcacaagttaatatttccct 45278695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 11666755 - 11666699
Alignment:
Q  113 taatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    |||||||||||||| ||||||||||||||| || |||| |||||| |||||||||||    
T  11666755 taatttctattagtggaattcttaacatgtgccataagtgcacaagttaacatttcc 11666699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 21148457 - 21148389
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  | |||  |||||| ||||||||||    
T  21148457 aattttcaatacataatttttattagtggaattcttaacatgtgtcttaaaagcacaacttaacatttc 21148389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 8073654 - 8073710
Alignment:
Q  112 ataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    |||||||||||||||  ||||||||||||||||||||||  ||||| ||| ||||||    
T  8073654 ataatttctattagtgaaattcttaacatgtaccctaagaacacaagttagcatttc 8073710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 20884567 - 20884635
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    ||||| ||||| | |||| |||||||| ||||||||||||||  ||||||| |||||| ||||||||||    
T  20884567 aatttccaatatacaattactattagtggaattcttaacatgagccctaagcgcacaagttaacatttc 20884635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 37391084 - 37391032
Alignment:
Q  119 ctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    |||||| ||||||||||||||||| || ||||||||||| ||||| |||||||    
T  37391084 ctattaatagaattcttaacatgtgccttaagggcacaagttaacttttccct 37391032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 6647581 - 6647514
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    ||||||| ||||||||||| |||||||  |||||||||||| | || ||||| ||||| |||||||||    
T  6647581 aattttctatacataatttttattagtgaaattcttaacatatgccataaggacacaagttaacattt 6647514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 6727194 - 6727139
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcac 155  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||| | || |||||||    
T  6727194 aattttcaatacataatttttattagtggaattcttaacttgtgctcttagggcac 6727139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 20884486 - 20884454
Alignment:
Q  133 cttaacatgtaccctaagggcacaaattaacat 165  Q
    ||||||||||||||||||||||||| |||||||    
T  20884486 cttaacatgtaccctaagggcacaagttaacat 20884454  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 27344649 - 27344577
Alignment:
Q  27 aacatgatctaatggttttaattcatggttcaccatgaaccacatggttggtggttcaccctagacatcacct 99  Q
    |||||||||| || ||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  27344649 aacatgatctgattgtttttattcatggtttaccatgaaccacatggttgatggttcaccttagacatcacct 27344577  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 17566754 - 17566686
Alignment:
Q  103 tttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    |||||||||| |||||||||||||||||||||||| |||| | |||||||||||| ||| |||||||||    
T  17566754 tttcaatacaaaatttctattagtagaattcttaatatgtgcactaagggcacaagttatcatttccct 17566686  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 15561997 - 15562060
Alignment:
Q  28 acatgatctaatggttttaattcatggttcaccatgaaccacatggttggtggttcaccctaga 91  Q
    |||| ||||||| ||||| |||||||||||||||| |||||| | |||||||||||||||||||    
T  15561997 acataatctaattgtttttattcatggttcaccatcaaccacttagttggtggttcaccctaga 15562060  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 32135864 - 32135804
Alignment:
Q  110 acataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||||||||||| |||| |||||||||| ||||||| ||| || ||||||||||||    
T  32135864 acataatttctattagtggaatccttaacatgtgccctaagagcagaagttaacatttccc 32135804  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 2903407 - 2903368
Alignment:
Q  110 acataatttctattagtagaattcttaacatgtaccctaa 149  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  2903407 acataatttctattagtagaattcttaacatgtgccctaa 2903368  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 10333847 - 10333780
Alignment:
Q  102 ttttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||||| ||||||||| ||||||| |||| ||||| ||||  | |||||||||||||||||||||||    
T  10333847 ttttcaagacataatttttattagttgaatccttaatatgtgtcttaagggcacaaattaacatttcc 10333780  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 21369180 - 21369110
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    |||||||||||||| || |||||||||  ||| |||||||||  || ||||||||||| ||||||||||||    
T  21369180 aattttcaatacatgatatctattagtgaaatccttaacatgcgccttaagggcacaagttaacatttccc 21369110  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 42656011 - 42656080
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    ||||||| | |||||||||||| ||||| ||| ||||||||||| | |||||||| || |||||||||||    
T  42656011 aattttcgagacataatttctactagtaaaatccttaacatgtatcataagggcataagttaacatttcc 42656080  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 5402802 - 5402873
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| ||||||| |||| |||||| | ||||| ||||||||| || |||||| |||| |||||||||||||    
T  5402802 aatttccaatacacaattactattaatggaatttttaacatgtgccttaaggggacaagttaacatttccct 5402873  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 25836973 - 25836906
Alignment:
Q  106 caatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccctaa 173  Q
    ||||||||||||  ||||||| |||||||||||||||  | |||||  ||||||||||||||| ||||    
T  25836973 caatacataattattattagtggaattcttaacatgtgacataaggatacaaattaacatttctctaa 25836906  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 32632431 - 32632389
Alignment:
Q  131 ttcttaacatgtaccctaagggcacaaattaacatttccctaa 173  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||    
T  32632431 ttcttaacatgtaccttaaaggcacaagttaacatttccctaa 32632389  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 3344982 - 3345042
Alignment:
Q  110 acataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||||||||||| |  ||| |||||||||| |||||||| | ||| ||||||||||||    
T  3344982 acataatttctattaatgaaatccttaacatgtgccctaaggacgcaagttaacatttccc 3345042  T

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Target: scaffold0154 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 36440 - 36511
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| |  ||||||||||| |||||||||||||    
T  36440 aatttccaatacataatttctattagtggaattcttaacatgtgctttaagggcacaagttaacatttccct 36511  T

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Target: scaffold1157 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 1973 - 2043
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccc 170  Q
    ||||||| | ||||||||||||||||| ||||  ||||||||| |||||||||||||| ||||||||||||    
T  1973 aattttcgagacataatttctattagtggaatcattaacatgtgccctaagggcacaagttaacatttccc 2043  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 32785872 - 32785930
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaa 157  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||||    
T  32785872 taatttccaatacataatttctattagtggaattcttaacatgtgccctaaggccacaa 32785930  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 154243 - 154182
Alignment:
Q  111 cataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcccta 172  Q
    |||||||||||||||| |||| |||||||||| |||||| ||| ||||||||||||||||||    
T  154243 cataatttctattagtggaatccttaacatgtgccctaaaggcgcaaattaacatttcccta 154182  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 31767850 - 31767781
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    |||||||||| |||||||||||||  | ||||||||||||||| | |||||||| |||||||||||||||    
T  31767850 aattttcaatgcataatttctatttatggaattcttaacatgtgctctaagggcgcaaattaacatttcc 31767781  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 9464601 - 9464533
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttc 168  Q
    ||||||||||| || |||||||||||||||||  ||||||||| || |||||||| |||||||||||||    
T  9464601 aattttcaataaatcatttctattagtagaatcattaacatgtgccataagggcataaattaacatttc 9464533  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 34396220 - 34396270
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaag 150  Q
    ||||||||||||||||||||||||||  ||||| ||||||||| |||||||    
T  34396220 aattttcaatacataatttctattagcggaattattaacatgtgccctaag 34396270  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 33972699 - 33972748
Alignment:
Q  101 attttcaatacataatttc-tattagtagaattcttaacatgtaccctaa 149  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  33972699 atttccaatacataatttcctattagtagaattcttaacatgtgccctaa 33972748  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 3213749 - 3213815
Alignment:
Q  99 taattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacat 165  Q
    |||||||| ||| ||||||||||||| |||||| |||||||| | || |||| |||||| |||||||    
T  3213749 taattttccatatataatttctattaatagaatgcttaacatatgccttaagagcacaagttaacat 3213815  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 17506479 - 17506419
Alignment:
Q  107 aatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacattt 167  Q
    |||||||||||||||||||| ||||| ||||||| | | ||||| |||||| ||| |||||    
T  17506479 aatacataatttctattagtggaatttttaacatatgctctaagagcacaagttagcattt 17506419  T

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Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 260405 - 260473
Alignment:
Q  103 tttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttccct 171  Q
    |||||||||||||||||||||||| | |||||||| |||| |||| ||||||||| ||| |||||||||    
T  260405 tttcaatacataatttctattagtggtattcttaatatgtgcccttagggcacaagttatcatttccct 260473  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 21300 - 21228
Alignment:
Q  100 aattttcaatacataatttctattagtagaattcttaacatgtaccctaagggcacaaattaacatttcccta 172  Q
    ||||| ||||| ||||||| ||||| | |||||||||||||||  ||||| ||||||| ||||||||| ||||    
T  21300 aatttccaatatataatttttattattggaattcttaacatgtgtcctaaaggcacaagttaacattttccta 21228  T

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Target: scaffold0061 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 3562 - 3615
Alignment:
Q  111 cataatttctattagtagaattcttaacatgtaccctaagggcacaaattaaca 164  Q
    |||||||| ||||| | ||||||||| |||||||||||||| ||||| ||||||    
T  3562 cataatttttattattggaattcttatcatgtaccctaaggacacaagttaaca 3615  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 130539 - 130592
Alignment:
Q  111 cataatttctattagtagaattcttaacatgtaccctaagggcacaaattaaca 164  Q
    |||||||| ||||| | ||||||||| |||||||||||||| ||||| ||||||    
T  130539 cataatttttattattggaattcttatcatgtaccctaaggacacaagttaaca 130592  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 100048 - 100016
Alignment:
Q  133 cttaacatgtaccctaagggcacaaattaacat 165  Q
    ||||||||||| |||||||||||||||||||||    
T  100048 cttaacatgtatcctaagggcacaaattaacat 100016  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 240597 - 240561
Alignment:
Q  133 cttaacatgtaccctaagggcacaaattaacatttcc 169  Q
    |||||||||| |||||||||||||| |||||||||||    
T  240597 cttaacatgtgccctaagggcacaagttaacatttcc 240561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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