View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17781_low_2 (Length: 591)

Name: NF17781_low_2
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17781_low_2
NF17781_low_2
[»] chr1 (4 HSPs)
chr1 (16-400)||(6059762-6060147)
chr1 (434-523)||(6060147-6060236)
chr1 (198-274)||(10401175-10401254)
chr1 (198-274)||(10403737-10403813)
[»] scaffold1207 (1 HSPs)
scaffold1207 (16-120)||(2306-2410)
[»] chr2 (1 HSPs)
chr2 (16-184)||(8668398-8668566)
[»] chr8 (1 HSPs)
chr8 (352-552)||(14197430-14197631)
[»] chr4 (3 HSPs)
chr4 (198-552)||(52409316-52409671)
chr4 (57-101)||(40384233-40384277)
chr4 (48-100)||(52409145-52409197)
[»] chr3 (4 HSPs)
chr3 (198-552)||(7776044-7776398)
chr3 (27-100)||(7776517-7776590)
chr3 (437-522)||(15272719-15272804)
chr3 (437-522)||(40874221-40874306)
[»] scaffold0853 (1 HSPs)
scaffold0853 (22-101)||(1316-1395)
[»] chr5 (2 HSPs)
chr5 (22-101)||(23205470-23205549)
chr5 (452-542)||(23205007-23205097)
[»] chr6 (2 HSPs)
chr6 (437-522)||(11326051-11326136)
chr6 (437-522)||(13223891-13223976)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 6059762 - 6060147
Alignment:
Q  16 ctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgtgttcggtctactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6059762 ctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgtgttcggtctactaa 6059861  T
Q  116 gcaaagtttttgcatgtttgtatgcgctaatgaaggtacacatatagtgaagggtgaaaatgaagaagggaagagaaagcgttcaacctcaagaactgat 215  Q
    |||||  |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6059862 gcaaaaattttgcttgtttgaatgcgctaatgaaggtacacatatagtgaagggtgaaaatgaagaagggaagagaaagcgttcaacctcaagaactgat 6059961  T
Q  216 tgtaaagcatcacttactgtttcaaaagcagggaagagaagtaaatgggttataaaaagcataaacaat-ttcataatcatggaatggttagtcctaaga 314  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  6059962 tgtaaagcatcacttactatttcaaaagcagggaagagaggtaaatgggttataaaaagcataaacaatgttcacaatcatggaatggttagtcctaaga 6060061  T
Q  315 gtgtagcttatcttcggtctcacaagaaaatgactgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctaca 400  Q
    |||| || ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6060062 gtgtggcctatctgcggtctcataagaaaatgattgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctaca 6060147  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 434 - 523
Target Start/End: Original strand, 6060147 - 6060236
Alignment:
Q  434 aatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa 523  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6060147 aatgccttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa 6060236  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 10401254 - 10401175
Alignment:
Q  198 tcaacctcaagaactgattgtaaagcatca---cttactgtttcaaaagcagggaagagaagtaaatgggttataaaaag 274  Q
    ||||||||||||| || |||||| ||||||   |||  ||||||||||||| |||||||| |||||||||| ||||||||    
T  10401254 tcaacctcaagaattggttgtaaggcatcatcactttttgtttcaaaagcatggaagagatgtaaatgggtgataaaaag 10401175  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 10403813 - 10403737
Alignment:
Q  198 tcaacctcaagaactgattgtaaagcatcacttactgtttcaaaagcagggaagagaagtaaatgggttataaaaag 274  Q
    |||||||| |||| || | |||| |||||||||  ||||||||||||  |||||||| |||||||||| ||||||||    
T  10403813 tcaacctctagaaatggtcgtaaggcatcactttttgtttcaaaagcgtggaagagatgtaaatgggtgataaaaag 10403737  T

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Target: scaffold1207 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 2306 - 2410
Alignment:
Q  16 ctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgtgttcggtctactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2306 ctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgtgttcggtctactaa 2405  T
Q  116 gcaaa 120  Q
    |||||    
T  2406 gcaaa 2410  T

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Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 8668398 - 8668566
Alignment:
Q  16 ctattgttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgtgttcggtctactaa 115  Q
    ||||||||||||||||||| ||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||||||| || |||| |  || ||    
T  8668398 ctattgttgatatggaattcgactccattgaagatgtaaaggaattctacacatcgtttgccaagaaagaaggttttggagttagtattcgtttcacaaa 8668497  T
Q  116 gcaaagtttttgcatgtttgtatgcgctaatgaaggtacacatatagtgaagggtgaaaatgaagaagg 184  Q
    ||||| | |||| ||||| |||||| |||||||||||| |||| |||| | |  |||||||||||||||    
T  8668498 gcaaaatatttgtatgttggtatgcactaatgaaggtaaacatctagtaaggaatgaaaatgaagaagg 8668566  T

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Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 352 - 552
Target Start/End: Complemental strand, 14197631 - 14197430
Alignment:
Q  352 agcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgg 451  Q
    ||||||||| | |||  ||||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||  |    
T  14197631 agcaactaataacctttttgagaa-tttgatgaa-aaggaatacatgcagggaaagttgctacaatgtttcatggtggagataatgctttttctagtgtg 14197534  T
Q  452 gattgctggaatcatcttagaaatctca----gaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgag 547  Q
    || ||||||||| |||||||| |||| |    |||||| | || |||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  14197533 gactgctggaat-atcttagacatcttaattagaagaaaacattttgacgtgggaaatgctcaagctgtctttaaattttgtaagcaaaaacaagttgag 14197435  T
Q  548 aatcc 552  Q
    |||||    
T  14197434 aatcc 14197430  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 198 - 552
Target Start/End: Original strand, 52409316 - 52409671
Alignment:
Q  198 tcaacctcaagaactgattgtaaagcatcacttactgtttcaaaagcagggaagagaagtaaatgggttataaaaagcataaacaatt-tcataatcatg 296  Q
    ||||| || ||||||||||| || |||| ||||| ||||||||||||| ||||||| || ||||||  ||| | |||| | |  |||  |||||||||||    
T  52409316 tcaacttctagaactgattgcaaggcattacttagtgtttcaaaagcatggaagaggagcaaatggagtatcataagcttcagtaatgatcataatcatg 52409415  T
Q  297 gaatggttagtcctaagagtgtagcttatcttcggtctcacaagaaaatgactgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacc 396  Q
      ||| |||| |||||||||||   ||||||| ||| ||| |||||||||  |    || |||  || || ||||||||||||||||| || ||| ||||    
T  52409416 ccatgcttagccctaagagtgtgaattatcttaggtgtcataagaaaatgggtatgccagctaggagtcttgttgagaagtttgatgaggagggaatacc 52409515  T
Q  397 tacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgat 496  Q
    |||||| || ||||||| ||||||  |  ||| || ||   ||||||||||| | ||||| |||||||| |||||||||||  ||||||| |||||||      
T  52409516 tacaggaaaggttgctaaaatgttcaatagtggaggtatgtctttttctagtagagattgttggaatcaccttagaaatcttcgaagaaggaatcttgta 52409615  T
Q  497 gtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatcc 552  Q
     | ||||||||||||||||| || || ||||| |||| ||| |||| |||| ||||    
T  52409616 attggagatgctcaagctgtattcaacttttgtaagacaaagcaagctgaggatcc 52409671  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 40384277 - 40384233
Alignment:
Q  57 gaattctacacatcatttgccaagaaagaaggttttggagttcgt 101  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||    
T  40384277 gaattctacacgtcatttgctaagaaagaaggttttggaattcgt 40384233  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 52409145 - 52409197
Alignment:
Q  48 gatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcg 100  Q
    ||||| || |||||||||| ||||||||| |||||||||||||||||| ||||    
T  52409145 gatgttaaggaattctacatatcatttgctaagaaagaaggttttggaattcg 52409197  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 198 - 552
Target Start/End: Complemental strand, 7776398 - 7776044
Alignment:
Q  198 tcaacctcaagaactgattgtaaagcatcacttactgtttcaaaagcagggaagagaagtaaatgggttataaaaagcataaacaatt-tcataatcatg 296  Q
    ||||| || ||||||||||| || |||| ||||| ||||||||||||| ||||||| || ||||||  ||| | |||| | |  |||  |||||||||||    
T  7776398 tcaacttctagaactgattgcaaggcattacttagtgtttcaaaagcatggaagaggagcaaatggagtatcataagcttcattaatgatcataatcatg 7776299  T
Q  297 gaatggttagtcctaagagtgtagcttatcttcggtctcacaagaaaatgactgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacc 396  Q
      ||| |||| |||||||||||   ||||||||||| ||| |||||||||  |    || |||  || || ||||||||||||||||| || ||| ||||    
T  7776298 tcatgcttagccctaagagtgtgaattatcttcggtgtcataagaaaatgggtatgccagctaggagtcttgttgagaagtttgatgagga-ggaatacc 7776200  T
Q  397 tacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgat 496  Q
    |||||| || |||| |  ||||||  |  ||| || ||   ||||||||||| | ||||| |||||||| |||||||||||  ||||||| |||||||      
T  7776199 tacaggaaaggttgatgaaatgttcaatagtggaggtatgtctttttctagtagagattgttggaatcaccttagaaatcttcgaagaaggaatcttgta 7776100  T
Q  497 gtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatcc 552  Q
     | ||||||||||||| ||| || || ||||| |||| ||| |||| |||||||||    
T  7776099 attggagatgctcaagttgtattcaacttttgtaagacaaagcaagctgagaatcc 7776044  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 7776590 - 7776517
Alignment:
Q  27 atggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcg 100  Q
    ||||||||| || |||||   ||||| || |||||||||| ||||||||| |||||||||||||||||| ||||    
T  7776590 atggaatttaacaccattaatgatgttaaggaattctacatatcatttgctaagaaagaaggttttggaattcg 7776517  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 522
Target Start/End: Complemental strand, 15272804 - 15272719
Alignment:
Q  437 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 522  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  15272804 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 15272719  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 522
Target Start/End: Original strand, 40874221 - 40874306
Alignment:
Q  437 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 522  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  40874221 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 40874306  T

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Target: scaffold0853 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 1316 - 1395
Alignment:
Q  22 ttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgt 101  Q
    |||||||||||||||||||  |||  ||||| ||| | || |||||||||||||| || ||||||||||||||| |||||    
T  1316 ttgatatggaatttgactctcttgatgatgttaaaaatttatacacatcatttgctaaaaaagaaggttttggaattcgt 1395  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 23205549 - 23205470
Alignment:
Q  22 ttgatatggaatttgactccattgcggatgtaaaagaattctacacatcatttgccaagaaagaaggttttggagttcgt 101  Q
    |||||||||||||||||||  |||  ||||| ||| | || |||||||||||||| || ||||||||||||||| |||||    
T  23205549 ttgatatggaatttgactctcttgatgatgttaaaaatttatacacatcatttgctaaaaaagaaggttttggaattcgt 23205470  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 542
Target Start/End: Complemental strand, 23205097 - 23205007
Alignment:
Q  452 gattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaag 542  Q
    ||||| ||||||||||||||| ||||| ||   | |||||| ||||| |||||||||||||| || || || ||||| ||| |||||||||    
T  23205097 gattgttggaatcatcttagagatctccgatctaaaaatctggatgttggagatgctcaagcagtgttaaacttttgtaagcaaaaacaag 23205007  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 522
Target Start/End: Original strand, 11326051 - 11326136
Alignment:
Q  437 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 522  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  11326051 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 11326136  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 522
Target Start/End: Complemental strand, 13223976 - 13223891
Alignment:
Q  437 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 522  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  13223976 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 13223891  T

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