View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17781_low_20 (Length: 233)
Name: NF17781_low_20
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17781_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 52269137 - 52269297
Alignment:
| Q |
15 |
cacagaggcaacgttagaaaactggtaatttggtttggatagaaaatgaagatttgattgaattttcaatatgaaaatgaaataaattattcccactgtt |
114 |
Q |
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| T |
52269137 |
cacaaaggcaacgttagaaaactggtaatttggtttggatagaaaattaagatttgattgaatcttcaatataaaattgaaataaattattcccactgtt |
52269236 |
T |
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| Q |
115 |
gttgggtgaacaaaggaggaagaaatccagtgactcgcgacaagaaaatgacaaacataat |
175 |
Q |
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| T |
52269237 |
gttgggtgaacaaaggaggaagaaatccagtgactcgcgacaagaaaatgacaaacataat |
52269297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 52269330 - 52269377
Alignment:
| Q |
171 |
ataattaataagcaacacttccaagggcagcaaaagaacccttaatac |
218 |
Q |
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| T |
52269330 |
ataattaataagcaacacttccaagggcagcaaaagaacccttaatac |
52269377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 13744059 - 13743965
Alignment:
| Q |
82 |
aatatgaaaatgaaata-aattattcccactgttgttgggtgaacaaaggaggaagaaatccagtgactcgcgacaagaaaatgacaaacataat |
175 |
Q |
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| T |
13744059 |
aatataaaaatgaaatagaatgattcccactgttgttgggtgaacaaaggaagaagaaatccagtggctcaatacaagaaaattacaaacataat |
13743965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 13743934 - 13743891
Alignment:
| Q |
175 |
ttaataagcaacacttccaagggcagcaaaagaacccttaatac |
218 |
Q |
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| T |
13743934 |
ttaataagcaacacttccaagggcagcaaaagaacccttaatac |
13743891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 13744107 - 13744069
Alignment:
| Q |
15 |
cacagaggcaacgttagaaaactggtaatttggtttgga |
53 |
Q |
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| T |
13744107 |
cacagaggtaacgttagaaaaccggtaatttggtttgga |
13744069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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