View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17781_low_25 (Length: 210)

Name: NF17781_low_25
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17781_low_25
NF17781_low_25
[»] chr2 (1 HSPs)
chr2 (13-187)||(5564778-5564952)
[»] chr1 (4 HSPs)
chr1 (13-149)||(31860130-31860266)
chr1 (13-91)||(13567482-13567560)
chr1 (152-187)||(5722560-5722595)
chr1 (152-187)||(44599587-44599622)
[»] chr7 (2 HSPs)
chr7 (13-108)||(1884968-1885061)
chr7 (136-187)||(1884914-1884965)
[»] chr5 (1 HSPs)
chr5 (20-68)||(5061940-5061988)
[»] chr3 (2 HSPs)
chr3 (152-187)||(9459152-9459187)
chr3 (152-187)||(16485136-16485171)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5564952 - 5564778
Alignment:
Q  13 agcacagacccttctgcatcttcttcctctcattcgctcactccctcttcttcaatggccatccaattcatgcaaaaacacctgcaaaaacttcctttaa 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5564952 agcacatacccttctgcatcttcttcctctcattcgctcactccctcttcttcaatggccatccaattcatgcaaaaacaccagcaaaaacttcctttaa 5564853  T
Q  113 cgttcaatctgcagtttctctggctctattccttctttggttggataattaacaaccaaatcaaaaacattatcc 187  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5564852 cgttcaatttgcagcttctatggctctattccttctttggttggataattaacaaccaaatcaaaaacattatcc 5564778  T

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Target: chr1 (Bit Score: 97; Significance: 7e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 31860266 - 31860130
Alignment:
Q  13 agcacagacccttctgcatcttcttcctctcattcgctcactccctcttcttcaatggccatccaattcatgcaaaaacacctgcaaaaacttcctttaa 112  Q
    |||||| ||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||    
T  31860266 agcacataccctgccgcatcttcttcttctcattcgctcattccctcttcttcaatggccatccaattcttgcaaaaacacctgcaaaaactccctctaa 31860167  T
Q  113 cgttcaatctgcagtttctctggctctattccttctt 149  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  31860166 cgttcaatctgcagcttctctgactctattccttctt 31860130  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 13567482 - 13567560
Alignment:
Q  13 agcacagacccttctgcatcttcttcctctcattcgctcactccctcttcttcaatggccatccaattcatgcaaaaac 91  Q
    |||||| ||||| || |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  13567482 agcacataccctgctacatcttcttcttctcatttgctcactccctcttcttcaatggacatccaattcatgcaaaaac 13567560  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 5722560 - 5722595
Alignment:
Q  152 gttggataattaacaaccaaatcaaaaacattatcc 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  5722560 gttggataattaacaaccaaatcaaaaacattatcc 5722595  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 44599587 - 44599622
Alignment:
Q  152 gttggataattaacaaccaaatcaaaaacattatcc 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  44599587 gttggataattaacaaccaaatcaaaaacattatcc 44599622  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 1885061 - 1884968
Alignment:
Q  13 agcacagacccttctgcatcttcttcctctcattcgctcactccctcttcttcaatggccatccaattcatgcaaaaacacctgcaaaaacttcct 108  Q
    |||||| ||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1885061 agcacataccctcctgcatcttcttcctc--attcgctcactctctcttcttcaatggccatccaattcatgcaaaaacacctacaaaaacttcct 1884968  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 1884965 - 1884914
Alignment:
Q  136 ctctattccttctttggttggataattaacaaccaaatcaaaaacattatcc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1884965 ctctattccttctttggttggataattaacaaccaaatcaaaaacattatcc 1884914  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 5061988 - 5061940
Alignment:
Q  20 acccttctgcatcttcttcctctcattcgctcactccctcttcttcaat 68  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  5061988 accctgctgcatcttcttcttctcattcactcactccctcttcttcaat 5061940  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 9459152 - 9459187
Alignment:
Q  152 gttggataattaacaaccaaatcaaaaacattatcc 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  9459152 gttggataattaacaaccaaatcaaaaacattatcc 9459187  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 16485136 - 16485171
Alignment:
Q  152 gttggataattaacaaccaaatcaaaaacattatcc 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  16485136 gttggataattaacaaccaaatcaaaaacattatcc 16485171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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