View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17781_low_3 (Length: 560)
Name: NF17781_low_3
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17781_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 39 - 544
Target Start/End: Original strand, 8239299 - 8239804
Alignment:
| Q |
39 |
gaacagaatgagattaactgcaagaagtgagtcggaatagcaagccaaaaccgcaaaatccaagctagctgccatagtaagaccatggtgcagagctgtc |
138 |
Q |
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| T |
8239299 |
gaacagaatgagattaactgcaagaagtgagtcggaatagcaagccaaaaccgcaaaatccaagctagctgccatagtaagaccatggtgcagagctgtc |
8239398 |
T |
|
| Q |
139 |
ggttcagcaaacaagatgtcgttggggctatcgatgaaacccatgaagccaataacataactgcctgagaagtttcggatcacacctccaaaaccagtac |
238 |
Q |
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| T |
8239399 |
agttcagcaaacaagatgtcgttggggctatcgatgaaacccgtgaagccaataacataactgcctgagaagtttcggatcacacctccaaaaccagtac |
8239498 |
T |
|
| Q |
239 |
gaataggatctccgatgcagcttccatcgacattaagaatagagcaagcatgatcttcattattccaacggacaagccttgcttgagggggagagctggt |
338 |
Q |
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| T |
8239499 |
gaataggatctccgatgcagcttccatcaacattaagaatagagcaagcatgatcttcattattccaacggacaagccttgcttgagggggagagctggt |
8239598 |
T |
|
| Q |
339 |
gtcactttgcagacagcggttgatcaaatctgctgtactgttaataataaagttgagacggtaaactgaacgagtttcattgataaggcacatgaggttg |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8239599 |
gtcactttgcagacagcggttgatcaaatctgctgtactgttaataataaagttgagacggtaaactgaacgagtttcattgttaaggcacatgaggttg |
8239698 |
T |
|
| Q |
439 |
cggtgtctccaaatccaccacagtcctgcgagaaaggtagtgggacggtggcagctaattccatccttcaaccagtcctgcaccgaagaggacgagaaga |
538 |
Q |
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| T |
8239699 |
cggtgtctccaaatccaccacagtcctgcgagaaaggtagtgggacggtggcagctaattccatccttcaaccagtcctgcaccgaagaggacgagaaga |
8239798 |
T |
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| Q |
539 |
aatccg |
544 |
Q |
| |
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| T |
8239799 |
aatccg |
8239804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 46 - 541
Target Start/End: Original strand, 15805653 - 15806147
Alignment:
| Q |
46 |
atgagattaactgcaagaagtgagtcggaatagcaagccaaaaccgcaaaatccaagctagctgccatagtaagaccatggtgcagagctgtcggttcag |
145 |
Q |
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| T |
15805653 |
atgagattaactgcgtgaagcgagtcggaatagcaaaccaaaactggaaaatccatgctaggtgccattgtaagaccacggtgcaacgctgtcaattcag |
15805752 |
T |
|
| Q |
146 |
caaacaagatgtcgttggggctatcgatgaaacccatgaagccaataacataactgcctgagaagtttcggatcacacctccaaaaccagtacgaatagg |
245 |
Q |
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| T |
15805753 |
aaaacaagatgtcatttgggctattgatgaaacccgaaaagccagcaacataaccacctatgaagtttcggatcacacctccaaaaacagtacgaatagg |
15805852 |
T |
|
| Q |
246 |
atctccgatgcagcttccatcgacattaagaatagagcaagcatgatcttcattattccaacggacaagccttgcttgagggggagagctggtgtcactt |
345 |
Q |
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| T |
15805853 |
atctccgaagcagcttccatcgacatttagaattgaacaagcatgatctttattattccaatggacaagcctcacttgagcgggagagcttgtgt-actt |
15805951 |
T |
|
| Q |
346 |
tgcagacagcggttgatcaaatctgctgtactgttaataataaagttgagacggtaaactgaacgagtttcattgataaggcacatgaggttgcggtgtc |
445 |
Q |
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|||| ||| |||||||| | |||| ||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||| | |||||| |
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| T |
15805952 |
tgcaaacaacggttgataatgtctgttgtactgttaataatggtgttgaggcggtaaactgaacgagttttattattaaggcacatgaggtggaggtgtc |
15806051 |
T |
|
| Q |
446 |
tccaaatccaccacagtcctgcgagaaaggtagtgggacggtggcagctaattccatccttcaaccagtcctgcaccgaagaggacgagaagaaat |
541 |
Q |
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| T |
15806052 |
tccaaatccaccacaaacctgcgagaaaggtagtggaaccgcggctgctaattccttccttcaacaagtccagcaccgaagagaaagagaagaaat |
15806147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 46 - 261
Target Start/End: Complemental strand, 33586699 - 33586484
Alignment:
| Q |
46 |
atgagattaactgcaagaagtgagtcggaatagcaagccaaaaccgcaaaatccaagctagctgccatagtaagaccatggtgcagagctgtcggttcag |
145 |
Q |
| |
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|||||||||||||| || |||||||||| |||||| ||||||| ||||||| || |||||||||||| ||||||| |||||| | |||| ||||| |
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| T |
33586699 |
atgagattaactgcctgaggtgagtcggagtagcaaaccaaaactgcaaaattcatgctagctgccattgtaagacatctgtgcagtgatgtcaattcag |
33586600 |
T |
|
| Q |
146 |
caaacaagatgtcgttggggctatcgatgaaacccatgaagccaataacataactgcctgagaagtttcggatcacacctccaaaaccagtacgaatagg |
245 |
Q |
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| ||||||||||||||||||| || |||||| ||| || |||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
33586599 |
ctaacaagatgtcgttggggccattgatgaagcccgagatgccagcaacataactacctgtgaagtttcagatcacacctccaaaaccagtacgaatagg |
33586500 |
T |
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| Q |
246 |
atctccgatgcagctt |
261 |
Q |
| |
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|||||| ||||||||| |
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| T |
33586499 |
atctccaatgcagctt |
33586484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 539
Target Start/End: Original strand, 1485801 - 1485940
Alignment:
| Q |
400 |
taaactgaacgagtttcattgataaggcacatgaggttgcggtgtctccaaatccaccacagtcctgcgagaaaggtagtgggacggtggcagctaattc |
499 |
Q |
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|||||||| | ||||||||| |||||||||| || ||| |||| |||||| ||||||| | || || |||||| |||||| ||||||||| |||| || |
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| T |
1485801 |
taaactgaccaagtttcattattaaggcacataagattgaggtgcctccaagtccaccataaccccgcaagaaagatagtggaacggtggcaactaactc |
1485900 |
T |
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| Q |
500 |
catccttcaaccagtcctgcaccgaagaggacgagaagaa |
539 |
Q |
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| T |
1485901 |
cctcttttaagcaatcaagaacagaagaggacgagaagaa |
1485940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 539
Target Start/End: Original strand, 23907044 - 23907183
Alignment:
| Q |
400 |
taaactgaacgagtttcattgataaggcacatgaggttgcggtgtctccaaatccaccacagtcctgcgagaaaggtagtgggacggtggcagctaattc |
499 |
Q |
| |
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|||||||| | ||||||||| |||||||||| || |||||||| |||||| ||||||| | || || |||||| |||||| ||||||||||||| || |
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| T |
23907044 |
taaactgaccaagtttcattattaaggcacataagattgcggtgcctccaagtccaccataaccccgcaagaaagatagtggatcggtggcagctaactc |
23907143 |
T |
|
| Q |
500 |
catccttcaaccagtcctgcaccgaagaggacgagaagaa |
539 |
Q |
| |
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| || || ||||| || | || ||||||||||||||||| |
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| T |
23907144 |
cctcttttaaccaatcaagaacagaagaggacgagaagaa |
23907183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 43142801 - 43142835
Alignment:
| Q |
424 |
aggcacatgaggttgcggtgtctccaaatccacca |
458 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
43142801 |
aggcacatgagattgcggtgtctccaaatccacca |
43142835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 506
Target Start/End: Complemental strand, 45332344 - 45332250
Alignment:
| Q |
412 |
gtttcattgataaggcacatgaggttgcggtgtctccaaatccaccacagtcctgcgagaaaggtagtgggacggtggcagctaattccatcctt |
506 |
Q |
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||||||||| | |||||||| || |||||||| ||||||||||| ||||| || |||||||| || ||| |||||| || ||||| ||||||| |
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| T |
45332344 |
gtttcattgtttaggcacataagattgcggtgcctccaaatccaacacagacccgcgagaaaaatattggaacggtgagagttaatttcatcctt |
45332250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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