View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17781_low_5 (Length: 440)
Name: NF17781_low_5
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17781_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 5051987 - 5052371
Alignment:
| Q |
19 |
atcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccac |
118 |
Q |
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| T |
5051987 |
atcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccac |
5052086 |
T |
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| Q |
119 |
tcttaaagatagtgaggttcaaagtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaatattcagtgaacattgaagacaatag |
218 |
Q |
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| T |
5052087 |
tctcaaagacagtgaggttcaatgtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaa-attcagtgaacatttaagacaatag |
5052185 |
T |
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| Q |
219 |
taccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcattgacttaactagtcaatgttnn |
318 |
Q |
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| T |
5052186 |
taccttggtttcagatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgctttgcattgacttaactagtcaatgttaa |
5052285 |
T |
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| Q |
319 |
nnnnnttgattataatatacaatatggatttcaaatatagtagttaatatcaaatttgcacggtgatataacagggatgcccttca |
404 |
Q |
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| T |
5052286 |
aaaatttgattataatatacaatatggctttcaaatatagtagttaatatcaaatttgcacggtgctataacagggatgcccttca |
5052371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 5048194 - 5048273
Alignment:
| Q |
218 |
gtaccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcatt |
297 |
Q |
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| T |
5048194 |
gtaccttagtttcaaatgtttgactgttctgacttggtcatgatctcatcaaatttggatatgttttaatgctttgcatt |
5048273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 5048513 - 5048570
Alignment:
| Q |
360 |
agttaatatcaaatttgcacggtgatataacagggatgcccttcacttctgtgatgtgc |
418 |
Q |
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| T |
5048513 |
agttaatatcaaatttgcacggtccta-aatagggatgcccttcacttttgtgatgtgc |
5048570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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