View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17781_low_6 (Length: 431)

Name: NF17781_low_6
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17781_low_6
NF17781_low_6
[»] chr6 (2 HSPs)
chr6 (15-422)||(34086359-34086765)
chr6 (237-336)||(24980242-24980339)
[»] scaffold0620 (1 HSPs)
scaffold0620 (145-416)||(1-272)
[»] chr4 (14 HSPs)
chr4 (237-341)||(35295843-35295946)
chr4 (234-341)||(11133416-11133522)
chr4 (234-340)||(3317420-3317527)
chr4 (282-340)||(12096074-12096132)
chr4 (282-340)||(50392068-50392126)
chr4 (282-340)||(30680749-30680807)
chr4 (282-340)||(43413303-43413360)
chr4 (237-306)||(45474597-45474666)
chr4 (260-324)||(20216760-20216824)
chr4 (261-331)||(11696454-11696524)
chr4 (368-414)||(35295765-35295811)
chr4 (261-334)||(5587662-5587734)
chr4 (365-402)||(34816820-34816857)
chr4 (282-310)||(7617745-7617773)
[»] chr5 (9 HSPs)
chr5 (279-340)||(13647173-13647234)
chr5 (265-339)||(19897150-19897224)
chr5 (241-337)||(22931363-22931459)
chr5 (282-340)||(34818455-34818513)
chr5 (263-327)||(8489272-8489336)
chr5 (234-273)||(19899019-19899058)
chr5 (260-330)||(5589230-5589300)
chr5 (308-340)||(2825831-2825863)
chr5 (355-418)||(24147366-24147427)
[»] chr8 (8 HSPs)
chr8 (234-337)||(33304970-33305073)
chr8 (282-340)||(14507470-14507528)
chr8 (282-340)||(21636527-21636585)
chr8 (282-340)||(10475322-10475380)
chr8 (286-340)||(41872691-41872745)
chr8 (234-337)||(31910486-31910590)
chr8 (237-331)||(30610786-30610880)
chr8 (271-332)||(9300868-9300929)
[»] chr7 (9 HSPs)
chr7 (237-337)||(11267700-11267800)
chr7 (284-340)||(42310282-42310338)
chr7 (282-340)||(1705830-1705888)
chr7 (282-340)||(38821326-38821384)
chr7 (280-340)||(47585766-47585826)
chr7 (237-316)||(33324073-33324152)
chr7 (286-340)||(40745888-40745942)
chr7 (261-341)||(47587813-47587888)
chr7 (284-337)||(24096839-24096892)
[»] chr3 (15 HSPs)
chr3 (282-340)||(13595353-13595411)
chr3 (282-340)||(41537501-41537559)
chr3 (282-340)||(22461104-22461162)
chr3 (286-340)||(38401072-38401126)
chr3 (282-340)||(50151715-50151772)
chr3 (285-336)||(22524898-22524949)
chr3 (259-337)||(54026713-54026791)
chr3 (288-340)||(42677889-42677941)
chr3 (261-337)||(9193246-9193322)
chr3 (299-340)||(25095686-25095727)
chr3 (261-334)||(50174050-50174123)
chr3 (237-337)||(23045459-23045558)
chr3 (286-340)||(3078904-3078957)
chr3 (261-334)||(25543307-25543380)
chr3 (288-317)||(52859096-52859125)
[»] chr1 (7 HSPs)
chr1 (282-340)||(8622270-8622328)
chr1 (282-340)||(11827983-11828041)
chr1 (284-340)||(27666395-27666451)
chr1 (290-340)||(1750074-1750124)
chr1 (282-340)||(27581656-27581714)
chr1 (288-340)||(27760362-27760414)
chr1 (261-332)||(49952560-49952631)
[»] chr2 (8 HSPs)
chr2 (282-340)||(10836760-10836818)
chr2 (282-340)||(24745812-24745870)
chr2 (284-340)||(41827998-41828054)
chr2 (240-337)||(4663013-4663111)
chr2 (279-341)||(45506858-45506920)
chr2 (282-335)||(25557137-25557190)
chr2 (299-341)||(23873522-23873564)
chr2 (241-306)||(40957092-40957157)
[»] scaffold0449 (1 HSPs)
scaffold0449 (237-289)||(5669-5721)


Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 34086359 - 34086765
Alignment:
Q  15 aaaatatacagtccttcccactccttcttaatatggtgaaatcaacctttgtaattaactacttttgcatgttttgtcttaggaactagtggtgcaagtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086359 aaaatatacagtccttcccactccttcttaatatggtgaaatcaacctttgtaattaactacttttgcatgttttgtcttaggaactagtggtgcaagtt 34086458  T
Q  115 tttccttaaactagttcatcatgtttgatcttatgtaatggttcatcatgttttgtcttaggggctgattcagattgtggtcgtaggattgattcacgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086459 tttccttaaactagttcatcatgtttgatcttatgtaatggttcatcatgttttgtcttaggggctgattcagattgtggtcgtaggattgattcacgtt 34086558  T
Q  215 gcagtcctatgatcggggcggaaaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaag 314  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34086559 gcagtcctatgatcggggcggaaaagactttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaa-taaataaaaag 34086657  T
Q  315 tatttagtcacatcaattgatatattggttcacgttgtaattttttagttttgtgtgtgtacccaaatatttttatttgggtttgtgcccatccaggtgt 414  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086658 tatttagtcacatcaattgatatattggttcacgctgtaattttttggttttgtgtgtgtacccaaatatttttatttgggtttgtgcccatccaggtgt 34086757  T
Q  415 gcctatgc 422  Q
    | ||||||    
T  34086758 gtctatgc 34086765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 24980242 - 24980339
Alignment:
Q  237 aaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgata 336  Q
    |||||||||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24980242 aaagtctttcat-gacacaaccccaaataaatattatttaggcaca-tcacataaaactaacaaaattaaataaaaagtatttactcacatcaattgata 24980339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 145 - 416
Target Start/End: Original strand, 1 - 272
Alignment:
Q  145 ttatgtaatggttcatcatgttttgtcttaggggctgattcagattgtggtcgtaggattgattcacgttgcagtcctatgatcggggcggaaaagtctt 244  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1 ttatgtaatggttgatcatgttttgtcttaggggctgattcagattgtggtcgtaggattgattcacgttgcagtcctatgattggggcggaaaagtctt 100  T
Q  245 tcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatattggtt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  101 tcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaaatatttagtcacatcaattgatatattggtt 200  T
Q  345 cacgttgtaattttttagttttgtgtgtgtacccaaatatttttatttgggtttgtgcccatccaggtgtgc 416  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  201 cacgttataattttttgattttgtgtgtgtacccaaatatttttatttgggtttgtgcccatcaagatgtgc 272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 35295946 - 35295843
Alignment:
Q  237 aaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgata 336  Q
    ||||| |||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35295946 aaagtttttcatggacacatctc-aaataaatattatttgggcacactcacataaaactaacaaaattaaataaaaagtattcagtcacatcaattgata 35295848  T
Q  337 tattg 341  Q
    |||||    
T  35295847 tattg 35295843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 11133522 - 11133416
Alignment:
Q  234 ggaaaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattg 333  Q
    ||||||||||||||| |||||||| |  |||||||||||||||| |||||||||||||||||||  |||| ||||||||| |||||| ||||||||||||    
T  11133522 ggaaaagtctttcatagacacaacaccgaataaatattatttagacacactcacataaaactaa-taaataaaataaaaaatatttaatcacatcaattg 11133424  T
Q  334 atatattg 341  Q
    || |||||    
T  11133423 atttattg 11133416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 3317527 - 3317420
Alignment:
Q  234 ggaaaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaata-aaaagtatttagtcacatcaatt 332  Q
    ||||||||||||||| || ||||| | ||||||||||||||| | || ||||| |||||||||||||||||||||| ||||  ||||||| |||||||||    
T  3317527 ggaaaagtctttcatagagacaaccccaaataaatattatttggacatactcatataaaactaacaaaattaaataaaaaaaaatttagttacatcaatt 3317428  T
Q  333 gatatatt 340  Q
    ||||||||    
T  3317427 gatatatt 3317420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 12096132 - 12096074
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12096132 actcacataaaactaacaaaattaaataaaaagtatttaatcacatcaattgatatatt 12096074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 50392126 - 50392068
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50392126 actcacataaaactaacaaaattaaataaaaagtatttagtcatatcaattgatatatt 50392068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 30680749 - 30680807
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  30680749 actcacataaaactaacaaaattgaataaaaagtatttagtcaaatcaattgatatatt 30680807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 43413303 - 43413360
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  43413303 actcacataaaactaacaaa-ttaaataaaaagtatttcgtcacatcaaatgatatatt 43413360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 45474666 - 45474597
Alignment:
Q  237 aaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaa 306  Q
    ||||||||||||  ||||||||||||||||||||||||||| || | | |||||||||||| ||||||||    
T  45474666 aaagtctttcatcaacacaactctaaataaatattatttagacagatttacataaaactaataaaattaa 45474597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 20216824 - 20216760
Alignment:
Q  260 taaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtca 324  Q
    ||||||||||| ||||   |||||||||||| || ||||||||||||||||||||||||||||||    
T  20216824 taaataaatatgatttgaacacactcacatacaattaacaaaattaaataaaaagtatttagtca 20216760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 11696524 - 11696454
Alignment:
Q  261 aaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaat 331  Q
    |||||||||| |||||||||| ||||||| |||| ||||||||| ||  ||||||||||||| ||||||||    
T  11696524 aaataaatatcatttaggcactctcacattaaacgaacaaaatttaagtaaaagtatttagttacatcaat 11696454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 35295811 - 35295765
Alignment:
Q  368 tgtgtgtacccaaatatttttatttgggtttgtgcccatccaggtgt 414  Q
    ||||||| || ||||||||||||||||||||||||||| ||| ||||    
T  35295811 tgtgtgtgcctaaatatttttatttgggtttgtgcccaaccaagtgt 35295765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 5587662 - 5587734
Alignment:
Q  261 aaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattga 334  Q
    ||||||||||| ||||||||| ||||||| ||| | | |||||| || ||||| |||||||||| |||||||||    
T  5587662 aaataaatattgtttaggcaccctcacatgaaa-tgaaaaaatttaagaaaaaatatttagtcaaatcaattga 5587734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 34816820 - 34816857
Alignment:
Q  365 ttgtgtgtgtacccaaatatttttatttgggtttgtgc 402  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  34816820 ttgtgtgtgcacccaaatacttttatttgggtttgtgc 34816857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 7617773 - 7617745
Alignment:
Q  282 actcacataaaactaacaaaattaaataa 310  Q
    |||||||||||||||||||||||||||||    
T  7617773 actcacataaaactaacaaaattaaataa 7617745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 13647234 - 13647173
Alignment:
Q  279 cacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13647234 cacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 13647173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 19897224 - 19897150
Alignment:
Q  265 aaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatat 339  Q
    ||||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19897224 aaatattatttggtcacatacacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatat 19897150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 22931363 - 22931459
Alignment:
Q  241 tctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatat 337  Q
    |||||||| |||||||| | ||||||||||||||| |  |||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||    
T  22931363 tctttcatggacacaaccccaaataaatattatttggatacactcacataaaattaacaaaattaaacaaaaaatatttagtcacatcaaatgatat 22931459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 34818455 - 34818513
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||||    
T  34818455 actcacataaaactaacaaaaataaaataaaagtatttagtcacatcaattaatatatt 34818513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 8489272 - 8489336
Alignment:
Q  263 ataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacat 327  Q
    ||||| ||||||| | ||||||||| ||||| ||||||||| |||| ||||||||||||||||||    
T  8489272 ataaacattatttggacacactcacgtaaaattaacaaaatcaaattaaaagtatttagtcacat 8489336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 19899058 - 19899019
Alignment:
Q  234 ggaaaagtctttcattgacacaactctaaataaatattat 273  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  19899058 ggaaaagtctttcatagacacaactctaaataaatattat 19899019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 5589300 - 5589230
Alignment:
Q  260 taaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaa 330  Q
    |||||||||||||||||||||| ||||||| |||  || ||||||||| ||||| |||||| ||| |||||    
T  5589300 taaataaatattatttaggcaccctcacatgaaatgaaaaaaattaaaaaaaaaatatttaatcaaatcaa 5589230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 2825863 - 2825831
Alignment:
Q  308 taaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||||||||||||||||||||||||    
T  2825863 taaaaagtatttagtcacatcaattgatatatt 2825831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 24147366 - 24147427
Alignment:
Q  355 ttttttagttttgtgtgtgtacccaaatatttttatttgggtttgtgcccatccaggtgtgcct 418  Q
    |||||| | |||||||||||  |||||||||||||||| |||||||| ||| ||| ||||||||    
T  24147366 ttttttggctttgtgtgtgt--ccaaatatttttatttaggtttgtgtccaaccaagtgtgcct 24147427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 337
Target Start/End: Original strand, 33304970 - 33305073
Alignment:
Q  234 ggaaaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattg 333  Q
    |||||||||||||||| |||||||  ||||||||||||| ||  | |||||||||| ||| |||||||||||||||||||||||||| |||||| |||||    
T  33304970 ggaaaagtctttcattaacacaaccttaaataaatattaattgagtacactcacatgaaattaacaaaattaaataaaaagtatttaatcacattaattg 33305069  T
Q  334 atat 337  Q
    ||||    
T  33305070 atat 33305073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 14507528 - 14507470
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14507528 actcacataaaactaacaaaattaaataaaaagtatttagtcaaatcaattgatatatt 14507470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 21636585 - 21636527
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||    
T  21636585 actcacataaaactaacaaaactcaataaaaagtatttaatcacatcaattgatatatt 21636527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 10475380 - 10475322
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  10475380 actcacacaaaactaacaaaattaaataaaaagtatttaatcaaatcatttgatatatt 10475322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 41872745 - 41872691
Alignment:
Q  286 acataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  41872745 acataaaactaacaaaattaaatgaaaaatatttaatcacatcaattgatatatt 41872691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 337
Target Start/End: Original strand, 31910486 - 31910590
Alignment:
Q  234 ggaaaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaat-aaaaagtatttagtcacatcaatt 332  Q
    ||||||| |||| ||  ||||||| | |||||||||||||||   ||||||||| | ||| |||||||||||||| |||||||||||| |||||| ||||    
T  31910486 ggaaaaggctttaatgaacacaaccccaaataaatattatttgaacacactcacgtgaaattaacaaaattaaataaaaaagtatttaatcacataaatt 31910585  T
Q  333 gatat 337  Q
    |||||    
T  31910586 gatat 31910590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 30610786 - 30610880
Alignment:
Q  237 aaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaat 331  Q
    ||||||||||||  |||||   |||||| |||||||||||  |||||| |||| |||| |||||||||||| ||||| |||||| ||||||||||    
T  30610786 aaagtctttcatgaacacacacctaaatcaatattatttacacacacttacatgaaaccaacaaaattaaacaaaaattatttaatcacatcaat 30610880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 9300868 - 9300929
Alignment:
Q  271 tatttaggcacactcacataaaactaacaaaattaaataaaaagt-atttagtcacatcaatt 332  Q
    ||||||||||||||||||| ||||||| |||||||||  |||| | |||||||||||||||||    
T  9300868 tatttaggcacactcacat-aaactaaaaaaattaaagcaaaattaatttagtcacatcaatt 9300929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 11267800 - 11267700
Alignment:
Q  237 aaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgata 336  Q
    ||||||||||||  ||||||| | |||||||||||| ||||| ||| |||||||||| ||||||||||||| |||||||||||||| ||||||| |||||    
T  11267800 aaagtctttcatgaacacaaccccaaataaatattacttaggaacaatcacataaaattaacaaaattaaagaaaaagtatttagttacatcaaatgata 11267701  T
Q  337 t 337  Q
    |    
T  11267700 t 11267700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 42310282 - 42310338
Alignment:
Q  284 tcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42310282 tcacataaaactaacaaaattaaataaaaagtatttagtcatatcaattgatatatt 42310338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 1705830 - 1705888
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  1705830 actcacataaaactaacaaaattaaataaaaagtatttagttaaatcaattgatatatt 1705888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 38821326 - 38821384
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  38821326 actcacgtaaaattaacaaaattaaataaaaagtatttagtcatatcaattgatatatt 38821384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 47585766 - 47585826
Alignment:
Q  280 acactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||| ||||||||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  47585766 acacgcacataaaactaacaaaaacaaataaaaagtatttaatcacatcaattgatatatt 47585826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 33324073 - 33324152
Alignment:
Q  237 aaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagta 316  Q
    |||||||||||   |||||||   ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  33324073 aaagtctttcacgaacacaacctgaaataaatattatttagacacactcacatgaaattaacaaaattaaataaaaagta 33324152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 40745888 - 40745942
Alignment:
Q  286 acataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  40745888 acataaaactaacaaaattaaataaaaagtatttaattatatcaattgatatatt 40745942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 47587888 - 47587813
Alignment:
Q  261 aaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatattg 341  Q
    |||||||||||||||   |||||| | |||||||||||||||||||||||||     ||||||||||||||||||||||||    
T  47587888 aaataaatattatttgaacacactaatataaaactaacaaaattaaataaaa-----ttagtcacatcaattgatatattg 47587813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 24096839 - 24096892
Alignment:
Q  284 tcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatat 337  Q
    |||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  24096839 tcacatgaaattaacaaaattaaataaaaagtatttaatcacatcaaatgatat 24096892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 13595411 - 13595353
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13595411 actcacataaaactaacaaaattaaataaaaagtatttagtcatatcaattgatatatt 13595353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 41537501 - 41537559
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41537501 actcacataaaactaacaaaattaaataaaaagtatttagtcaaatcaattgatatatt 41537559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 22461162 - 22461104
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  22461162 actcacataaaactaacaaaattaaataaaaagtatttagttaaatcaattgatatatt 22461104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 38401126 - 38401072
Alignment:
Q  286 acataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  38401126 acataaaattaacaaaattaaataaaaagtatttagtcacgtcaattgatatatt 38401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 50151715 - 50151772
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  50151715 actcacataaaactaacaaaattaaataaaaa-tatttaatcacatcaattgatatatt 50151772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 22524949 - 22524898
Alignment:
Q  285 cacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgata 336  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  22524949 cacataaaactaacaaaattaaataaaaaatatttagtcaaatcaattgata 22524898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 54026791 - 54026713
Alignment:
Q  259 ctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatat 337  Q
    ||||||||||||||||||| |||||||| || ||| |||| |||||||| ||||| |||||| ||||||||| ||||||    
T  54026791 ctaaataaatattatttagacacactcatatgaaattaacgaaattaaacaaaaaatatttaatcacatcaaatgatat 54026713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 42677889 - 42677941
Alignment:
Q  288 ataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||    
T  42677889 ataaaactaacaaaattaaataaaatgtatttaatcatatcaattgatatatt 42677941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 9193322 - 9193246
Alignment:
Q  261 aaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatat 337  Q
    |||||||||||||||||  |||||||||| |||  || |||| |||||||||||||||||| || ||||||| ||||    
T  9193322 aaataaatattatttagatacactcacatgaaatcaataaaactaaataaaaagtatttagccatatcaattaatat 9193246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 25095686 - 25095727
Alignment:
Q  299 aaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  25095686 aaaattaaataaaaagtatttaatcaaatcaattgatatatt 25095727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 50174123 - 50174050
Alignment:
Q  261 aaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattga 334  Q
    |||| ||| |||||||||||||||||| | |||  ||||||||| || |||||  |||||||||||||||||||    
T  50174123 aaatcaatcttatttaggcacactcacgtgaaatgaacaaaatttaagaaaaataatttagtcacatcaattga 50174050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 23045558 - 23045459
Alignment:
Q  237 aaagtctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgata 336  Q
    ||||||||||||  ||| ||| | ||||||||||||||| ||||||||||| ||||| | | ||||| ||| ||||| |||| | ||||||||||| |||    
T  23045558 aaagtctttcataaacataaccccaaataaatattatttgggcacactcacgtaaaatttataaaataaaacaaaaa-tattcaatcacatcaatttata 23045460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 3078957 - 3078904
Alignment:
Q  286 acataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||| ||||||||||||||| |||||| |||||| ||||| ||||||    
T  3078957 acataaaactaataaaattaaataaaaaatatttaatcacat-aattggtatatt 3078904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 25543380 - 25543307
Alignment:
Q  261 aaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattga 334  Q
    |||| |||||||||| ||||| |||||||||||  ||||| ||| || |||||  || ||||||||||||||||    
T  25543380 aaatcaatattatttgggcaccctcacataaaaggaacaatatttaagaaaaataatctagtcacatcaattga 25543307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 317
Target Start/End: Original strand, 52859096 - 52859125
Alignment:
Q  288 ataaaactaacaaaattaaataaaaagtat 317  Q
    ||||||||||||||||||||||||||||||    
T  52859096 ataaaactaacaaaattaaataaaaagtat 52859125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 8622270 - 8622328
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8622270 actcacataaaactaacaaaattaaataaaaagtatttagtcaaatcaattgatatatt 8622328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 11828041 - 11827983
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11828041 actcacataaaactaacaaaattaaataaaaagtatttagtcaaatcaattgatatatt 11827983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 27666451 - 27666395
Alignment:
Q  284 tcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  27666451 tcacataaaactaacaaaattaaataaaaagtatttagtcacattaattgctatatt 27666395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 1750124 - 1750074
Alignment:
Q  290 aaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1750124 aaaactaacaaaattaaacaaaaagtatttagtcacatcaattgatatatt 1750074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 27581714 - 27581656
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  27581714 actcacataaaattaacaaaattaaataaaaagtatttaatcaaatcaattgatatatt 27581656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 27760414 - 27760362
Alignment:
Q  288 ataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  27760414 ataaaactaacaaaattcaataaaaagtatttaatcacatcaattgatatatt 27760362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 49952560 - 49952631
Alignment:
Q  261 aaataaatattatttaggcacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaatt 332  Q
    |||||||||| ||||||| || ||||||| |||  ||||||||| ||  |||||||||||||||||||||||    
T  49952560 aaataaatatcatttaggtactctcacattaaatgaacaaaatttaagtaaaagtatttagtcacatcaatt 49952631  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 10836760 - 10836818
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  10836760 actcacataaaattaacaaaattaaataaaaagtatttagtcatatcaattgatatatt 10836818  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 24745870 - 24745812
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  24745870 actcacataaaactaacaatattaaataaaaagtatttagttacatcaattgatatatt 24745812  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 41827998 - 41828054
Alignment:
Q  284 tcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatatt 340  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  41827998 tcacataaaattaacaaaattaaataaaaagtatttagtcaaatcaattgatatatt 41828054  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 4663111 - 4663013
Alignment:
Q  240 gtctttcattgacacaactctaaataaatattatttagg-cacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatat 337  Q
    |||||||||  ||||||| | ||||||||||| ||| || |||||||  || ||| ||||||||||||||||||||||||||||||||| |||||||||    
T  4663111 gtctttcatgaacacaacccgaaataaatatttttttgggcacactcgtatgaaattaacaaaattaaataaaaagtatttagtcacatgaattgatat 4663013  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 45506920 - 45506858
Alignment:
Q  279 cacactcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgatatattg 341  Q
    ||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||    
T  45506920 cacactcacataaaactaataaaataaaataaaaagtattcaatcacatcaattgatatattg 45506858  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 25557190 - 25557137
Alignment:
Q  282 actcacataaaactaacaaaattaaataaaaagtatttagtcacatcaattgat 335  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  25557190 actcacgtaaaattaacaaaattaaataaaaagtatttagtcacatcaattgat 25557137  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 23873522 - 23873564
Alignment:
Q  299 aaaattaaataaaaagtatttagtcacatcaattgatatattg 341  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23873522 aaaattaaataaaaagtatttagtcacatcaattgatatattg 23873564  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 40957157 - 40957092
Alignment:
Q  241 tctttcattgacacaactctaaataaatattatttaggcacactcacataaaactaacaaaattaa 306  Q
    ||||||||||||||| ||| |||| ||||||||||||||||| ||||||  ||  |||||||||||    
T  40957157 tctttcattgacacagctccaaatcaatattatttaggcacagtcacatgtaatgaacaaaattaa 40957092  T

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Target: scaffold0449 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 5721 - 5669
Alignment:
Q  237 aaagtctttcattgacacaactctaaataaatattatttaggcacactcacat 289  Q
    |||||||||||| |||||||| | |||||||||||||||   |||||||||||    
T  5721 aaagtctttcatggacacaaccccaaataaatattatttgaacacactcacat 5669  T

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