View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17781_low_7 (Length: 430)
Name: NF17781_low_7
Description: NF17781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17781_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 36548532 - 36548334
Alignment:
| Q |
13 |
aaaatatgcatgttaacagaatattaatgnnnnnnnttatgttcaatatggacaaaatcaagtaaggggatataatggaatagcaaaatggcagcatcat |
112 |
Q |
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| T |
36548532 |
aaaatatgcatgttaacagaatattaatgaaaaaaattatgttcaatatggacaaaatcaagtaaggggatataatggaatagcaaaatggcagcatcat |
36548433 |
T |
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| Q |
113 |
ctttacaaaaactaggtatcaatgtcttctcgggatcaagaaaactatgacattgtttacttcctcctaaaggtagagttatgataatacagttttggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
36548432 |
ctttacaaaaactaggtatcaatgtcttctcgggatcaagaaaactatgacattgtttacttcctcctaaagctagagttatgatgatacagttttggt |
36548334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 300 - 411
Target Start/End: Complemental strand, 36548270 - 36548159
Alignment:
| Q |
300 |
ggagaatgcaatgcataaaagtaccattgaagccctattcatatttttgtgaactaaaggtaaaggtcggttaccttggctttcataaacttgtccaaca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
36548270 |
ggagaatgcaatgcataaaagtaccattgaagccctattcatatttttgtgaactaaaggcaaaggtcggttaccttggctttcatatacttgtccaaca |
36548171 |
T |
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| Q |
400 |
gaatgttggaag |
411 |
Q |
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| T |
36548170 |
gaatgttggaag |
36548159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 3991336 - 3991279
Alignment:
| Q |
79 |
gggatataatggaatagcaaaatggcagcatcatctttacaaaaactaggtatcaatg |
136 |
Q |
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| T |
3991336 |
gggatataatagaatagcaaaatggcagcatcatctttacaaaaactaggtatcaatg |
3991279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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