View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17782_high_3 (Length: 330)

Name: NF17782_high_3
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17782_high_3
NF17782_high_3
[»] chr6 (3 HSPs)
chr6 (104-311)||(13408953-13409151)
chr6 (19-96)||(13409183-13409254)
chr6 (237-290)||(13408814-13408868)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 104 - 311
Target Start/End: Complemental strand, 13409151 - 13408953
Alignment:
Q  104 ttagctagataagtttaaaataatgctaataatggtgttcaccatttttggctttagataaaactaagaatcaaacgataaaaacaatgaaacatcaagc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  13409151 ttagctagataagtttaaaataatgctaataatggtgttcaccatttttggctttagataaaactaagaatcaaac---------aatgaaacatcaagc 13409061  T
Q  204 ttcaacacatataaaccaagtgatgaatatgtgcaaacaataatgttttgtgatcaagaaatgaatgaaaaataagttgaatcatctggcccgcagcaat 303  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  |    
T  13409060 ttcaacacatataaaccaagtgatgaatatgtgcaaataataatgttttgtgatcaagaaatgaatgaaaaataacttgaatcatctagcccgcagctgt 13408961  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 13409254 - 13409183
Alignment:
Q  19 gaaatgatatgcacctgcacaagataagaggtgaatagtgaatcgttaatacagattcattgtgcatggttttttaac 96  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||      ||||||||||||||||||||||||    
T  13409254 gaaatgatatgcacctgcacaagataagaggtgaatagtgaatcctta------attcattgtgcatggttttttaac 13409183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 13408868 - 13408814
Alignment:
Q  237 caaacaataatgttttgtgatcaagaaatgaatga-aaaataagttgaatcatct 290  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  13408868 caaacaataatgttttgtgatcaagaaatgaatgaaaaaataagttaaatcatct 13408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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