View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17782_high_5 (Length: 248)
Name: NF17782_high_5
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17782_high_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 16463618 - 16463380
Alignment:
| Q |
10 |
atgaactgcatataggaacacttggaataaagttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaatcggtgca |
109 |
Q |
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| T |
16463618 |
atgaactgcatataggaacacttggaataaagttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaataggtgca |
16463519 |
T |
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| Q |
110 |
ggcctgtatctagaaactaccgttgttggaagaattgtcgcagttggtttcctgtaacagaacatgataggttgagcatatcaatggtatattatttttc |
209 |
Q |
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| T |
16463518 |
ggcctgtatctagaaactactgttgttggaagaattgttgcagttggtttcctgtaacagaacatgataggttgagcatatctatggtatattatttttc |
16463419 |
T |
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| Q |
210 |
aactgtttccaatcaacttacagatagaattataataat |
248 |
Q |
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| T |
16463418 |
aactgtttccaatcaacttacagatagaattataataat |
16463380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 16493609 - 16493480
Alignment:
| Q |
42 |
ttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaatcggtgcaggcctgtatctagaaactaccgttgttggaag |
141 |
Q |
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| T |
16493609 |
ttaccttgagaatgttttctgttaggcttgaagggcctctagatgagaatgatgccacaattggtgcaggcctatatctaggaatttctattgttggaag |
16493510 |
T |
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| Q |
142 |
aattgtcgcagttggtttcctgtaacagaa |
171 |
Q |
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| T |
16493509 |
aattgttgcagttggtttcctgtaacagaa |
16493480 |
T |
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