View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17782_low_10 (Length: 247)
Name: NF17782_low_10
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17782_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 36845129 - 36845342
Alignment:
| Q |
14 |
atgaaaccagttttggacataaaatcaatttttaaaacaaacttatattacaacttaatgtgatgtgttctggtgttttactttccagtttttaaaccac |
113 |
Q |
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| T |
36845129 |
atgaaaccagttttggacataaaatcaatttttaaaacaaacttatattacaacttaatgtgatgtgttctggtgttttactttccagtttttaaatcac |
36845228 |
T |
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| Q |
114 |
actgctgatcataagttttaactctttccaattcaaataccatttgaagtaatgtctataattttgacgtgaaaatggttaaaattacataacagagaag |
213 |
Q |
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| T |
36845229 |
actgctgatcataagttttaactc--tccaattcaaatatcatttgaagtaatgtctataattttgacgtgaaaatggttaaaattacataacagagaag |
36845326 |
T |
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| Q |
214 |
gctcaagcaagtgttg |
229 |
Q |
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| T |
36845327 |
gctcaagcaagtgttg |
36845342 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 10561903 - 10561864
Alignment:
| Q |
124 |
ataagttttaactctttccaattcaaataccatttgaagt |
163 |
Q |
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| T |
10561903 |
ataagttttaattctttccaattcaaataccatttgaagt |
10561864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 791707 - 791792
Alignment:
| Q |
79 |
tgttctggtgttttactttccagtttttaaaccacactgctgatcataagttt--taactctttccaattcaaataccatttgaag |
162 |
Q |
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| T |
791707 |
tgttatggtgctttactttccagtttttaaaccatgttgctgatagtaagttttatagctctttccggttcaaataccctttgaag |
791792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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