View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17782_low_14 (Length: 227)
Name: NF17782_low_14
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17782_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 24395523 - 24395639
Alignment:
| Q |
98 |
aaaaaggttgtagttgctaaaattgatttgtcttttggaaatttagttttgtttttgaaggaacttttggaaattatgttgagtaaggaattcgtcgacc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
24395523 |
aaaaaggttgtagttgctaaaattgatttgtcttttggaaatttagttttgtttttgaaggaacttttggaaattaagttgagtaagggattcgtcgacc |
24395622 |
T |
|
| Q |
198 |
acataataaagataaga |
214 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24395623 |
acataataaagataaga |
24395639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 24395414 - 24395508
Alignment:
| Q |
22 |
ttgcatatataatttgattaatttaggttttggtagaattagtttttaaaagattgatattaaacgaattgagtttaaaaaggttgtagttgcta |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24395414 |
ttgcatatataatttgtttaatttaggttttggtagaattagtttttaaaagattgatattaaacgaattgagtttaaaaaggttgtagttgcta |
24395508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University