View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17782_low_16 (Length: 218)
Name: NF17782_low_16
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17782_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 28925084 - 28924898
Alignment:
| Q |
16 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
115 |
Q |
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| T |
28925084 |
aggaatcaacagatcatcaaagcaagatgacatcagccaagaaattctgctccggctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
28924985 |
T |
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| Q |
116 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagt |
202 |
Q |
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| T |
28924984 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagt |
28924898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 28901456 - 28901270
Alignment:
| Q |
16 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
115 |
Q |
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| T |
28901456 |
aggaatcaaaagatcatcaaagcaagctgacatcaaccaagaaattctgctccggctttcttatgtgccaaaagatgtacctatcagccaaatttctgat |
28901357 |
T |
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| Q |
116 |
gttgacttttctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagt |
202 |
Q |
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| T |
28901356 |
gttgacttttctgaggtattattaatttgctaacaatattttctgctgcactatcccccaattctgaaacctggttgcaatcaaagt |
28901270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 28915877 - 28915701
Alignment:
| Q |
26 |
agatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgatgttgactttt |
125 |
Q |
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| T |
28915877 |
agatcatcaaaccaagacgaaatcaaccaagaaattctgctccggctttctaatgtgcccaaagatgtatctatcagccaaatttctgatgttgactttt |
28915778 |
T |
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| Q |
126 |
ctgaggtattattactttgccaacaatattttctgatgcaatatcccccaattctgaatcctggttgcaatcaaagt |
202 |
Q |
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| T |
28915777 |
ctgaggtattattactttgctaacaatattttctgctgcaatgtcccacaattctgaaacctggtttcaatcaaagt |
28915701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 28890965 - 28890845
Alignment:
| Q |
16 |
aggaatcaacagatcatcaaagcaagatgacatcaaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgat |
115 |
Q |
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| T |
28890965 |
aggaatcaaaagatcatcaaagaaggaggaaatctaccaagaaattcagctccggctttcttatgtggcagaagatgtacctatcagcaaaatttctgat |
28890866 |
T |
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| Q |
116 |
gttgacttttctgaggtatta |
136 |
Q |
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| T |
28890865 |
gatgacttttctgaggtatta |
28890845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 28933993 - 28933901
Alignment:
| Q |
49 |
caaccaagaaattctgctccagctttctaatgtgccaaaagatgtacctatcagccaaatttctgatgttgacttttctgaggtattattact |
141 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||| |||| |
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| T |
28933993 |
caaccaagaaattctgctccagctctctaatgtgccaaaagatgtacctatcagcaaaatatctgacgatgacttttctgaggtattaatact |
28933901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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