View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17782_low_2 (Length: 456)

Name: NF17782_low_2
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17782_low_2
NF17782_low_2
[»] chr8 (3 HSPs)
chr8 (128-438)||(45098538-45098848)
chr8 (23-72)||(45098904-45098953)
chr8 (28-72)||(1561372-1561416)
[»] chr1 (2 HSPs)
chr1 (191-330)||(48887377-48887516)
chr1 (28-71)||(35017677-35017720)
[»] chr6 (1 HSPs)
chr6 (28-72)||(34429645-34429689)
[»] chr5 (2 HSPs)
chr5 (28-71)||(10771820-10771863)
chr5 (39-71)||(34117480-34117512)
[»] chr7 (1 HSPs)
chr7 (39-71)||(529468-529500)
[»] chr4 (1 HSPs)
chr4 (39-71)||(1075564-1075596)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 128 - 438
Target Start/End: Complemental strand, 45098848 - 45098538
Alignment:
Q  128 tcagactctatatggtagttctttagttggtgatatttactgtgatcaatttctgctatggataggtgggattctgggactaatgttggtgaatttgatg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45098848 tcagactctatatggtagttctttagttggtgatatttactgtgatcaatttctgctatggataggtgggattctgggactaatgttggtgaatttgatg 45098749  T
Q  228 gccactcaaggcgagttttgagttgtgcttataaacctacaaggccttttcgcattgtcacctgtggagaggattttcttgtcaacttttatgaaggacc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45098748 gccactcaaggcgagttttgagttgtgcttataaacctacaaggccttttcgcattgtcacctgtggagaggattttcttgtcaacttttatgaaggacc 45098649  T
Q  328 gccctttagatttaagcaatctcacaggtatggtgtgagaaactcaatggtgatgcagtcnnnnnnncgatatgtttgtttgtcttctgctctctgtaga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||    
T  45098648 gccctttagatttaagcaatctcacaggtatggtgtgagaaactcaatggtgatgcagtctttttttcgatatgtttgtttgtcttctgctctctttaga 45098549  T
Q  428 cgttgattaat 438  Q
    |||||||||||    
T  45098548 cgttgattaat 45098538  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 45098953 - 45098904
Alignment:
Q  23 ctcggaaacaatctctcaagtgtttatgccagtagataagctcgaataaa 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45098953 ctcggaaacaatctctcaagtgtttatgccagtagataagctcgaataaa 45098904  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 1561372 - 1561416
Alignment:
Q  28 aaacaatctctcaagtgtttatgccagtagataagctcgaataaa 72  Q
    |||||||||| ||||||||||||||| |||||||| || ||||||    
T  1561372 aaacaatctcacaagtgtttatgccattagataagatcaaataaa 1561416  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 330
Target Start/End: Original strand, 48887377 - 48887516
Alignment:
Q  191 aggtgggattctgggactaatgttggtgaatttgatggccactcaaggcgagttttgagttgtgcttataaacctacaaggccttttcgcattgtcacct 290  Q
    ||||||||||| ||  | | ||||||||| ||||||||||| ||| |||| ||| | |||||||| |  ||||| |||||||| || ||||||||| | |    
T  48887377 aggtgggattcaggttccactgttggtgattttgatggccattcacggcgggttctaagttgtgcattcaaaccaacaaggccattccgcattgtctcgt 48887476  T
Q  291 gtggagaggattttcttgtcaacttttatgaaggaccgcc 330  Q
    ||||||| |||||| | |  |||||||||||||| |||||    
T  48887477 gtggagaagattttttagcaaacttttatgaaggtccgcc 48887516  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 35017677 - 35017720
Alignment:
Q  28 aaacaatctctcaagtgtttatgccagtagataagctcgaataa 71  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||    
T  35017677 aaacaatctcacaagtgtttatgccaatagataagctcaaataa 35017720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 34429689 - 34429645
Alignment:
Q  28 aaacaatctctcaagtgtttatgccagtagataagctcgaataaa 72  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||    
T  34429689 aaacaatatctcaagtgtttatgctagtagataagctcaaataaa 34429645  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 10771863 - 10771820
Alignment:
Q  28 aaacaatctctcaagtgtttatgccagtagataagctcgaataa 71  Q
    |||||||||| |||||| |||||||||||||||||||| |||||    
T  10771863 aaacaatctcacaagtgcttatgccagtagataagctcaaataa 10771820  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 34117512 - 34117480
Alignment:
Q  39 caagtgtttatgccagtagataagctcgaataa 71  Q
    ||||||||||||||||||||||||||| |||||    
T  34117512 caagtgtttatgccagtagataagctccaataa 34117480  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 529468 - 529500
Alignment:
Q  39 caagtgtttatgccagtagataagctcgaataa 71  Q
    ||||||||||||||||||||||||||| |||||    
T  529468 caagtgtttatgccagtagataagctcaaataa 529500  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 1075564 - 1075596
Alignment:
Q  39 caagtgtttatgccagtagataagctcgaataa 71  Q
    ||||||||||||||||||||||||||| |||||    
T  1075564 caagtgtttatgccagtagataagctcaaataa 1075596  T

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