View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17782_low_3 (Length: 379)
Name: NF17782_low_3
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17782_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 345
Target Start/End: Complemental strand, 50465518 - 50465207
Alignment:
| Q |
29 |
cttcttatatcactttctttcctttattctaagtgtatatttcatattgcgtgagacggtttttacattgtcacaactaatcatacatgtgacttttaga |
128 |
Q |
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| T |
50465518 |
cttcttatatcactttctttcctttatt------gtatatctcatattgcgtgagacggtttttacattatcacaactaatcatacacgtgatttttaga |
50465425 |
T |
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| Q |
129 |
agtaattatgattaaagttaaatgtgattaatgatttaatgggttaattaaccgtnnnnnnnnn-tctttacatataaattattgggtgaaaagcagaaa |
227 |
Q |
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| T |
50465424 |
agtaattaatattaaagttaaatgtgattaatgatttaacgggttaattaaccgtaaaaaaaaaatctttacatataaattattgggtgaaaagcagaaa |
50465325 |
T |
|
| Q |
228 |
tatcatatggtatctctccctctatccaaatgacgggttatttattgaatgtgacagggatatatagtatatgaggtaaaaacaataaaaagaagttctt |
327 |
Q |
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| T |
50465324 |
tatcatatggtatctctccctctatccaaatgacgggttatttattgaatgtgacagggatatatagtatatgaggtaaaaacaataaaaagaagttcct |
50465225 |
T |
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| Q |
328 |
aataaatacagagcctag |
345 |
Q |
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| T |
50465224 |
aataaatacagagcctag |
50465207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 26491837 - 26491773
Alignment:
| Q |
107 |
aatcatacatgtgacttttagaagtaattatgattaaagttaaatgtgattaatgatttaatgggtt |
173 |
Q |
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| T |
26491837 |
aatcatacatgtga--ttgagaagtgattatgataaaatttaaatgtgattaataatttaaagggtt |
26491773 |
T |
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