View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17782_low_4 (Length: 378)
Name: NF17782_low_4
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17782_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 50465724 - 50465370
Alignment:
| Q |
14 |
atcacagaatgtaatgcattatgcatgtacataaaagaatggatatgcaactgtgtattacta-------attctttttagccattcacaaacaagtcaa |
106 |
Q |
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| T |
50465724 |
atcacagaatgtaatgcattatgcatgtacataaaagaatggatatgcaactgtgtattactacttactaattctttttagccattcacaaacaagtcaa |
50465625 |
T |
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| Q |
107 |
ctagcacgatcaagtactaactctatacaacattttcaattgtaatcttgattttcttaccccattttctcctctctgttttgctacatcaaatctatta |
206 |
Q |
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| T |
50465624 |
ctagcacgatcaagtactaactctatacaacattttcaattgtaatcttgattttcttaccccattttctcctctctattttgctacatcaaatctatta |
50465525 |
T |
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| Q |
207 |
nnnnnnnncttcttatatcactttctttcctttattctaagtgtatatttcatattgcgtgagacggtttttacattgtcacaactaatcatacatgtga |
306 |
Q |
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| T |
50465524 |
--ttttttcttcttatatcactttctttcctttat------tgtatatctcatattgcgtgagacggtttttacattatcacaactaatcatacacgtga |
50465433 |
T |
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| Q |
307 |
cttttagaagtaattatgattaaagttaaatgtgattaatgatttaatgggttaattaaccgt |
369 |
Q |
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| T |
50465432 |
tttttagaagtaattaatattaaagttaaatgtgattaatgatttaacgggttaattaaccgt |
50465370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 26491837 - 26491773
Alignment:
| Q |
293 |
aatcatacatgtgacttttagaagtaattatgattaaagttaaatgtgattaatgatttaatgggtt |
359 |
Q |
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| T |
26491837 |
aatcatacatgtga--ttgagaagtgattatgataaaatttaaatgtgattaataatttaaagggtt |
26491773 |
T |
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