View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17782_low_6 (Length: 326)
Name: NF17782_low_6
Description: NF17782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17782_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 29662505 - 29662188
Alignment:
| Q |
1 |
aatattgattttgattgtaggaaaactaatgtcaccacagtcaatattttactgggaaatcatggagttacgaatgcaggaattacccgatgcgcatttc |
100 |
Q |
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| T |
29662505 |
aatattgattttgattgtaggaaaactaatgtcaccacagtcaatattttactgggaaatcatggagttacgaatgcaggaattacccaatgcgcatttc |
29662406 |
T |
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| Q |
101 |
aatttttnnnnnnncatattgagcattagctattatcgatataggattaattcgcataactataaaatgaattgattacttaggatttagatggacaatg |
200 |
Q |
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| T |
29662405 |
aatttttaaaaaaacatattgagcattagctattatcgatataggattaattcgcataactataaaatgaattgattacttaggatttagatggacaatg |
29662306 |
T |
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| Q |
201 |
tctacattcttggttcatcgattgaattggccaattaagttaacatatttgcacctaaagcaagttatgactgtgtgacagcacaatagtgagtaataaa |
300 |
Q |
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| T |
29662305 |
tctacattcttggatcatcgattgaattggccaattaagttaacatatttgcacctaaagcaagttatgactgtgtgacagcacaatagtgagtaataaa |
29662206 |
T |
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| Q |
301 |
accttgaaggtgatgatg |
318 |
Q |
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| T |
29662205 |
accttgaaggtgatgatg |
29662188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 127 - 318
Target Start/End: Original strand, 33183432 - 33183622
Alignment:
| Q |
127 |
tagctattatcgatataggattaattcgcataactataaaatgaattgattacttaggatttagatggacaatgtctacattcttggttcatcgattgaa |
226 |
Q |
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| T |
33183432 |
tagctattatcgatataggattaattcgcataac--tagaacgaattgactacttaggatttagatggacaacatctatattcttgggccaacaatcgaa |
33183529 |
T |
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| Q |
227 |
ttggccaattaagt----taacatatttgcacctaaagcaagttatgactgtgtgacagcacaatagtgagtaa-taaaaccttgaaggtgatgatg |
318 |
Q |
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| T |
33183530 |
ttgacgaa-taagttaactaacatctttgcacctaaagcatgctatgactgtg---cagtacaatagtgagtaactaaaacattgaaggtgatgatg |
33183622 |
T |
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