View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17783_high_2 (Length: 607)
Name: NF17783_high_2
Description: NF17783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17783_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Original strand, 1217543 - 1218017
Alignment:
| Q |
18 |
aatttggaaaatgaatttcatgggatcatgcatttatgcagttgataatctaagcggttgatccttattggacatatatatttatcaaacttataatgta |
117 |
Q |
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| T |
1217543 |
aatttggaaaatgaatttcatgcggtcatgcatttatgcagttgataatctaaacggttgatccttattggacatatatatttatcaaatttataatgta |
1217642 |
T |
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| Q |
118 |
aagtgtctgatcttgatccaacgactttgaggtgtcaactatttgactgcatgattgtctaagtgtaagagtgggtcatgggacaaggaaagttgtgaca |
217 |
Q |
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| T |
1217643 |
aagtgtctgatcttgatccaacgactctgaggtgtcaactatttgactgcatgattatctaagtgtaagagtgggtcatgggacaaggaaagttgtgaca |
1217742 |
T |
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| Q |
218 |
tttgaagggtagttgagtcctattcattgatatctaagagggattaagaaaggccaataagatgatgtaaaaatccaaagtctctaaaacccacttacac |
317 |
Q |
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| T |
1217743 |
tttgaagggtagttgagtcttattcattgatatctaagagggcttaagaaaggccaataagatgatgtaaaaatccaaagtctctaaaacccacttacac |
1217842 |
T |
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| Q |
318 |
caaaatccaaacacaagacatcttgtttttcttttctcaatatgtgcacgtgaaaccccaataattcctcatgcacaagtggggtatacaaagacagcac |
417 |
Q |
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| T |
1217843 |
caaaatccaaacacaagacatcttgtttttcttttctcaatatgtgcacgtgaaaccccaataattcctcatgcacaagtggggtatacaaagacagcac |
1217942 |
T |
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| Q |
418 |
ttcctcttttgttctcatgccaaattccaccactcagaatctcctctctttttcctctctcactctcaaatgtac |
492 |
Q |
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| T |
1217943 |
ttcctcttttgttctcatgccaaattccaccactcagaatctcctctctttttcctctctcactctcaaatgtac |
1218017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 1218071 - 1218124
Alignment:
| Q |
546 |
acaaattcatggctttcaacatagctactatgttgccattttttctttcctttg |
599 |
Q |
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| T |
1218071 |
acaaattcatggctttcaacatagctactatgttgccattttttctttcctttg |
1218124 |
T |
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