View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17783_high_3 (Length: 498)
Name: NF17783_high_3
Description: NF17783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17783_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 10 - 482
Target Start/End: Complemental strand, 37145894 - 37145422
Alignment:
| Q |
10 |
tagattatactctttggcctttctactggtaaatttgtacatgatacatcttttcatctttactattttctggagtacccactaaactttctttcttatc |
109 |
Q |
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| T |
37145894 |
tagattatactctttggcctttctactggtaaatttgtacatgatacatcttttcatctttactattttctggagtacccactaaactttctttcttatc |
37145795 |
T |
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| Q |
110 |
atgtatttgactacaccaattgaatctcaaatttcagtgagtgccgctccaagcacgacacaccttctttgtttccccattccagaggcatcttgagtgc |
209 |
Q |
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| T |
37145794 |
atgtatttgactacaccaattgaatctcaaatttcagtgagtgccgctccaagcacgacacaccttctttgtttccccattccagaggcatcttgagtgc |
37145695 |
T |
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| Q |
210 |
actcaaagatgaaggaattgatgctgccattgcttccaaatcaccaactcccgacatagcaaccacatatcttgacaaactcaaaatcacctcaatgttt |
309 |
Q |
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| T |
37145694 |
actcaaagatgaaggaattgatgctgccattgcttccaaatcaccaactcccgacatagcaaccacctatcttgacaaactcaaaatcacctcaatgttt |
37145595 |
T |
|
| Q |
310 |
gtcgcccaggtttgttcctcggtggaaagacgaacacttcaatccacttttctattgcacttatttgtatgtatatttattttacggcaagttcttgtta |
409 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
37145594 |
gttgcccaggtttgttcctcagtggaaagacgaacacttcaatccacttttctattgcacttatttgtatgtatatttattttacggcacgttgttgtta |
37145495 |
T |
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| Q |
410 |
ggtccaaatttaatttctcttttttattgtttaggaaatattttacagctctacacacaaaacagaacatttt |
482 |
Q |
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| T |
37145494 |
ggtccaaatttaatttctcttttttattgtttaggaaatattttacagctctacacacaaaacagaacatttt |
37145422 |
T |
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