View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17783_high_8 (Length: 274)
Name: NF17783_high_8
Description: NF17783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17783_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 13886364 - 13886615
Alignment:
| Q |
7 |
aatattctaccaacaactctattcttaaatctcaacaaaccaaacattctcaaagtccccaaaaaccataattcaagggaaagaaattacaatcacttag |
106 |
Q |
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| T |
13886364 |
aatattctcccaacaactctattcttaaatctcaacaaaccaaacattctcaaagtccccaaaaaccataattcaagggaaagaaattacaatcacttag |
13886463 |
T |
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| Q |
107 |
tcatttcaaaagttaaccaatttttcacaaacataaatttttcagctcatcaaatcaaaccaaaaggtagacgcaaaaaacacttcaatataacacaaca |
206 |
Q |
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| T |
13886464 |
tcatttcaaaagttaaccaattttccacaaacataaatttttcagctcatcaaatcaaaccaaaaggtagacgcaaaaaacacttcaatataacacaaca |
13886563 |
T |
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| Q |
207 |
tattcaattcatgcatttcagcattccctatgatgaattgatcattcgattg |
258 |
Q |
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| T |
13886564 |
tattcaattcatgcatttcagcattccctatgatcaattgatcattccattg |
13886615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13898692 - 13898628
Alignment:
| Q |
7 |
aatattctaccaacaactctattcttaaatctcaacaaaccaaacattctcaaagtccccaaaaa |
71 |
Q |
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|||||| |||||| || |||||||| ||||| |||||| | |||||||||||||||||||||||| |
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| T |
13898692 |
aatattgtaccaagaattctattctcaaatcccaacaatcaaaacattctcaaagtccccaaaaa |
13898628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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