View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17783_low_10 (Length: 334)
Name: NF17783_low_10
Description: NF17783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17783_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 318
Target Start/End: Complemental strand, 32565312 - 32564999
Alignment:
| Q |
5 |
aggatagctctttgtttcataatgattttatctatgttcactaaatcatcttcttgcttccataatggttttgatttgctgttctaactacttgcggtgt |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32565312 |
aggatagatctttgtttcataatgattttatctatgtttactaaatcatcttcttgatttcataatggttttgatttgctgttctaactacttgtggtgt |
32565213 |
T |
|
| Q |
105 |
tacaaaatcagggatgtgatgcttccttgctattggaagacaatgttgatagaaatggttcctatgagaagcaggctattccaaatcaaacattgaaagg |
204 |
Q |
| |
|
| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32565212 |
ttctaaatcagggttgtgatgcttccttgctattggaagacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaagg |
32565113 |
T |
|
| Q |
205 |
ttttgacaaagttgacttgatcaaggaggaggtggaacaagcatgtcccggcattgtgtcgtgtgctgacatacttgctcttgccgcaagagattccgtt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32565112 |
ttttgacaaagttgacttgatcaaggaggaggtggaacaagcatgtcccggcattgtgtcgtgtgctgacatacttgctcttgccgcaagagattccgtt |
32565013 |
T |
|
| Q |
305 |
cttttggtatgttc |
318 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32565012 |
cttttggtatgttc |
32564999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 32309522 - 32309835
Alignment:
| Q |
5 |
aggatagctctttgtttcataatgattttatctatgttcactaaatcatcttcttgcttccataatggttttgatttgctgttctaactacttgcggtgt |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
32309522 |
aggatagatctttgtttcataatgattttatctatgtttactaaatcatcttcttgctttcataatggttttgatttgttgttctaactacttgtggtgt |
32309621 |
T |
|
| Q |
105 |
tacaaaatcagggatgtgatgcttccttgctattggaagacaatgttgatagaaatggttcctatgagaagcaggctattccaaatcaaacattgaaagg |
204 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32309622 |
tacgaaatcagggatgtgatgcttccttgctattggaagacaatggtgatagaaatggttcctatgagaagcaggctattccaaatcaaacattgaaagg |
32309721 |
T |
|
| Q |
205 |
ttttgacaaagttgacttgatcaaggaggaggtggaacaagcatgtcccggcattgtgtcgtgtgctgacatacttgctcttgccgcaagagattccgtt |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32309722 |
ttttgacaaagttgacttgattaaggaggaggtggaacaagcatgtcccggcgttgtgtcttgtgctgatatacttgctcttgccgcaagagattccgtt |
32309821 |
T |
|
| Q |
305 |
cttttggtatgttc |
318 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
32309822 |
cttttggtttgttc |
32309835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 32814932 - 32814622
Alignment:
| Q |
8 |
atagctctttgtttcataatgattttatctatgttcactaaatcatcttcttgcttccataatggttttgatttgctgttctaactacttgcggtgttac |
107 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32814932 |
atagatctttgtttcatagtgattttatctatgtttactaaatcatcttcttgatttcataatggttttgatttgctgttctaactacttgtggtgttac |
32814833 |
T |
|
| Q |
108 |
aaaatcagggatgtgatgcttccttgctattggaagacaatgttgatagaaatggttcctatgagaagcaggctattccaaatcaaacattgaaaggttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32814832 |
gaaatcagggatgtgatgcttccttgctattggaagacaatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttt |
32814733 |
T |
|
| Q |
208 |
tgacaaagttgacttgatcaaggaggaggtggaacaagcatgtcccggcattgtgtcgtgtgctgacatacttgctcttgccgcaagagattccgttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32814732 |
tgacaaagttgacttgatcaaggaagaggtggagcaagcatgtcccggcgttgtttcttgtgctgacatacttgctcttgccgtaagagattccgttctt |
32814633 |
T |
|
| Q |
308 |
ttggtatgttc |
318 |
Q |
| |
|
||||| ||||| |
|
|
| T |
32814632 |
ttggtttgttc |
32814622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 46 - 318
Target Start/End: Original strand, 32305427 - 32305702
Alignment:
| Q |
46 |
taaatcatcttcttgcttccataatggttttgatttgctgttctaactacttgcggtg---ttacaaaatcagggatgtgatgcttccttgctattggaa |
142 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
32305427 |
taaatcatcttcttgctttcataatggctttgatttgctgttctaactacttgtggtggtgttgccaaatcagggatgtgatgcttccttgctattggaa |
32305526 |
T |
|
| Q |
143 |
gacaatgttgatagaaatggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggaac |
242 |
Q |
| |
|
||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32305527 |
gactatggtgatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggatc |
32305626 |
T |
|
| Q |
243 |
aagcatgtcccggcattgtgtcgtgtgctgacatacttgctcttgccgcaagagattccgttcttttggtatgttc |
318 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||||||||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
32305627 |
aagcatgtcccggcgttgtgtcttgtactgacatacttgctcttgtcacaagagattccgttcttttggtttgttc |
32305702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 87 - 319
Target Start/End: Original strand, 28220815 - 28221047
Alignment:
| Q |
87 |
tctaactacttgcggtgttacaaaatcagggatgtgatgcttccttgctattggaagacaatgttgatagaaatggttcctatgagaagcaggctattcc |
186 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||||||||||||| | ||||| ||||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
28220815 |
tctaactacttgtggtgttgctgaatcagggttgtgatgcttccttgttgttggaggacaatggtgatagaaacagttcctatgagaagcaagctattcc |
28220914 |
T |
|
| Q |
187 |
aaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggaacaagcatgtcccggcattgtgtcgtgtgctgacatacttgctctt |
286 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
28220915 |
aaatcaaacattgaaaggtaatgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctcttgtgctgacatacttgctctt |
28221014 |
T |
|
| Q |
287 |
gccgcaagagattccgttcttttggtatgttct |
319 |
Q |
| |
|
|| || |||||||||||| ||||||| |||||| |
|
|
| T |
28221015 |
gcagcgagagattccgtttttttggtttgttct |
28221047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 163 - 319
Target Start/End: Complemental strand, 28215365 - 28215209
Alignment:
| Q |
163 |
ttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggaacaagcatgtcccggcattgtg |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
28215365 |
ttcctatgagaagcaggctattccaaatcaaacattaaaaggttttgacaaagttgacttgattaaggaggaggtggaacaagcatgtcccggcgttgtc |
28215266 |
T |
|
| Q |
263 |
tcgtgtgctgacatacttgctcttgccgcaagagattccgttcttttggtatgttct |
319 |
Q |
| |
|
|| ||||||||||||||||||||||| || |||||||||||| ||||||| |||||| |
|
|
| T |
28215265 |
tcttgtgctgacatacttgctcttgcagcgagagattccgtttttttggtttgttct |
28215209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 301941 - 302008
Alignment:
| Q |
48 |
aatcatcttcttgcttccataatggttttgatttgctgttctaactacttgcggtgttacaaaatcag |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| | ||||||| |
|
|
| T |
301941 |
aatcatcttcttgctttcataatggttttgatttgcttttctaacaacttgtggtgttgcgaaatcag |
302008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University