View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17783_low_11 (Length: 319)
Name: NF17783_low_11
Description: NF17783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17783_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 8036859 - 8037137
Alignment:
| Q |
20 |
tggtcggagctgatgaagaccaacatctgttggcttcacgtccatgtcatcgtattcgaccagtaatttgtcggaggaaatccacctgaggatggtggcg |
119 |
Q |
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| T |
8036859 |
tggtcggagctgatgaagaccaacatctgttggcttcacgtccatgtcatcgtattcgaccagtaatttgtcggaggaaacccacctgacgatggtggcg |
8036958 |
T |
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| Q |
120 |
gtgaaccatgagcagtatatgccgccgccatggtcgatgctcacttccactttgttgcccggatcaaacttgaatttttgaaccatggtcactcccaatc |
219 |
Q |
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| T |
8036959 |
gtgaaccatgagcagtatatgccgccaccacggtcgatgttcacttccactttgtttcccggatcaaacttaaatttttgaaccatggtcactcccaatc |
8037058 |
T |
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| Q |
220 |
ccaaggtgtgtatttcactacttcgtacaacaacgctgttaatattactttatagggttagggcaaaactacatgtccaacacaggt |
306 |
Q |
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| T |
8037059 |
ccaaggtgtgtatttcactactttgtacaaca--------aatattactttatagggttagggcataactacatgtccaacacaggt |
8037137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 8042338 - 8042614
Alignment:
| Q |
20 |
tggtcggagctgatgaagaccaacatctgttggcttcacgtccatgtcatcgtattcgaccagtaatttgtcggaggaaatccacctgaggatggtggcg |
119 |
Q |
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| T |
8042338 |
tggtcggagctgatgaagaccgacagttgttggcttcacgtccacgtcatcgtattcgaccagtaatttgtcggaggagacccacttgacgatggtggcg |
8042437 |
T |
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| Q |
120 |
gtgaaccatgagcagtatatgccgccgccatggtcgatgctcacttccactttgttgcccggatcaaacttgaatttttgaaccatggtcactcccaatc |
219 |
Q |
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| T |
8042438 |
gtgaaccatgagcagtatatgccgatgccatggtcgatgctcacttccactttgttgccgggatggaacttgaattttccaaccatgatcac------tc |
8042531 |
T |
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| Q |
220 |
ccaaggtgtgtatttcactacttcgtacaacaacgctgttaatattactttatagggttagggcaaaactacatgtccaacac |
302 |
Q |
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| T |
8042532 |
tcaaggtgtgtattccactactccgtacaacaacgctgttaatattactttataggattagggcaaaactacatgtcaaacac |
8042614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 304
Target Start/End: Complemental strand, 8416063 - 8415826
Alignment:
| Q |
54 |
ttcacgtccatgtcatcgtattcgaccagtaatttgtcggaggaaatccacctgaggatggtggcggtgaaccatgagcagtatatgccgccgccatggt |
153 |
Q |
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| T |
8416063 |
ttcacgtccatgtcatcgtattcgaccagtaatttgtcagacgaaacccacctgacgatggtggcggtggaccatgagcagtatatgccgccgcctctgt |
8415964 |
T |
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| Q |
154 |
cgatgctcacttccactttgttgcccggatcaaacttgaatttttgaaccatggtcactcccaatcccaaggtgtgtatttcactacttcgtacaacaac |
253 |
Q |
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| T |
8415963 |
cgttgctcacttccactttgttgcctggattgaacttgaattttcgaaccatgatcac------tctcaaggtgtgtattccactact-------acaac |
8415877 |
T |
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| Q |
254 |
gctgttaatattactttatagggttagggcaaaactacatgtccaacacag |
304 |
Q |
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| T |
8415876 |
gctgttaatattactttattgggttagggcaaaactacatgtcaaacacag |
8415826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 9139961 - 9140123
Alignment:
| Q |
20 |
tggtcggagctgatgaagaccaacatctgttggcttcacgtccatgtcatcgtattcgaccagtaatttgtcggaggaaatccacctgaggatggtggcg |
119 |
Q |
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||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
9139961 |
tggtcggagctgatgaagaccgacaactgttggcttcacatccatgtcatcgtattggaccagtaatatgtcggaggagaaccacctgaggatggtggcg |
9140060 |
T |
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| Q |
120 |
gtgaaccatgagcagtatatgccgccgccatggtcgatgctcacttccactttgttgcccgga |
182 |
Q |
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| T |
9140061 |
gggaaccatgagcaggatatgccgctgccgcggtcgatgctcacttccactttgttgcccgga |
9140123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8410293 - 8410100
Alignment:
| Q |
20 |
tggtcggagctgatgaagaccaacatctgttggcttcacgtccatgtcatcgtattcgaccagtaatttgtcggaggaaatccacctgaggatggtggcg |
119 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||| ||| ||||| |
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| T |
8410293 |
tggtcggagctgatgaagaccgacaactgttggcttcacgtcctcgtcatcgaattcgaccagtaatttgtcggaggagaaccacctgatgattgtggct |
8410194 |
T |
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| Q |
120 |
gtgaaccatgagcagtatatgccgccgccatggtcgatgctcacttccactttgttgcccggatcaaacttgaatttttgaaccatggtcactc |
213 |
Q |
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||||||||||||| ||||||||| || | |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| |
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| T |
8410193 |
gtgaaccatgagcggtatatgccaccactgcagtcgttgctcacttccactttgttgcccggatcgaacttgaatttttcaaccatgatcactc |
8410100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 9140171 - 9140235
Alignment:
| Q |
243 |
cgtacaacaacgctgttaatattactttatagggttagggcaaaactacatgtccaacacaggtt |
307 |
Q |
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| T |
9140171 |
cgtacaacaacgctgttaatcttactttatagggttagggcataactgcgtgtcaaacacaggtt |
9140235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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