View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17783_low_4 (Length: 435)
Name: NF17783_low_4
Description: NF17783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17783_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 45 - 220
Target Start/End: Original strand, 9601445 - 9601622
Alignment:
| Q |
45 |
tgaatgcacaaccaaacatgccattttctatcaataaaggtgtcctcatttctggcttacaaacagcacaaacaagtaacaataaataattgagcatcat |
144 |
Q |
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| T |
9601445 |
tgaatgcacaaccaaacatgccattttctatcattaaaggtgtcctcatttatggctaacaaacggcaccaacaagtaacaataaataactgagcatcat |
9601544 |
T |
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| Q |
145 |
gggaagttgcccaatttttgaaccaaactgaattatccaagacagttaagaag--acacatgtgacatgaagtgcttc |
220 |
Q |
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| T |
9601545 |
ggaaagttgcttaatatttgaagcaaactgaatgatccattacagttaagaagatacacatgtgacatgaaatgcttc |
9601622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 9605017 - 9605158
Alignment:
| Q |
34 |
atttaacatggtgaatgcacaaccaaacatgccattttctatcaataaaggtgtcctcatttctggcttacaaacagcacaaacaagtaacaataaataa |
133 |
Q |
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| T |
9605017 |
atttaacttggtgattgcacaaccaaacatgatattttctatcattaaaggtgacatcatttttggattacaaacggcaccaacatgtaacaataaataa |
9605116 |
T |
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| Q |
134 |
ttgagcatcatgggaagttgcccaatttttgaaccaaactga |
175 |
Q |
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| T |
9605117 |
ctgagcatcatgggaagtttcccagttttttaactaaactga |
9605158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 54292011 - 54291951
Alignment:
| Q |
186 |
acagttaagaa-gacacatgtgacatgaagtgcttctgaaactaaggtggaaagattgcag |
245 |
Q |
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| T |
54292011 |
acagttaagaaagacacatgtgaaatgaagtgcttcccaaactaaagtggatagattgcag |
54291951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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