View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17783_low_5 (Length: 397)
Name: NF17783_low_5
Description: NF17783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17783_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 12134894 - 12135277
Alignment:
| Q |
1 |
gttagttgcaacacaagttgaatgcgtcactccagaatgtgatttaaagtgtacggtaatatgttccaagcaaaaaatactaccatttgatcagtgcatg |
100 |
Q |
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| T |
12134894 |
gttagttgcaacacaagttgaatgcgtcactccagaatgtgatttaaagtgtacggtaatatgttccaagcaaaaaatactaccatttgatcagtgcatg |
12134993 |
T |
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| Q |
101 |
aaagcttgtacaaatcgatgctcggtgcctgtcaaaacaaaaacatcagaaatggtatcatagttttcatttctcttcaccttttattgtcttttttgaa |
200 |
Q |
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| T |
12134994 |
aaagcttgtacaaatcgatgctcggtgcctgtcaaaacaaaaacatcagaaatggtatcatagttttcatttctcttcaccttttattgtcttttttgaa |
12135093 |
T |
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| Q |
201 |
caaatctaaatgtttttatattttactttgtaggttgttcgtggaatgcatacataaattgattcaagctttggagagtttgcaacaataataaataaac |
300 |
Q |
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| T |
12135094 |
caaatctaaatgtttttatattttactttgtaggttgttcgtggaatgcatacataaattgattcaagctttggagagtttgcaacaataataaataaac |
12135193 |
T |
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| Q |
301 |
attttgtatgttatgtgacatgagattcagtataataatacagtgtactcatgagaattgacgttgttatttaatgcctatttt |
384 |
Q |
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| T |
12135194 |
attttgtatgttatgtgagatgagattctgtataataatacagtgtactcatgagaattgacgttgttatttaatgcctatttt |
12135277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 4563317 - 4563267
Alignment:
| Q |
221 |
ttttactttgtaggttgttcgtggaatgcatacataaattgattcaagctt |
271 |
Q |
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| T |
4563317 |
ttttactttgtaggttgttcctgaaatgcatacataaatttattcatgctt |
4563267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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