View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17783_low_9 (Length: 349)
Name: NF17783_low_9
Description: NF17783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17783_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 27579650 - 27579967
Alignment:
| Q |
18 |
attgcagctgcattggccgaactctgtcatcacatattgtgtgtttctgtgtttggttttctttgaaccagattgatgttctaacactaattaaattctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27579650 |
attgcagctgcattggccgaactctgtcatcacatattgtgtgtttctgtgtttggttttctttgaaccagattgatgttctaacactaattaaattctc |
27579749 |
T |
|
| Q |
118 |
tatttagttaagttacaattaagcaaaaaagttcataaaatcattatggaatacttgagaattaatgaacaaggaaaagagagggagggagagagaatat |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27579750 |
tatttagttaagttacaattaagaaaaaaagttcataaaatcattatggaatacttgagaattaatgaacaaggaaaagagagggagggagagagaatat |
27579849 |
T |
|
| Q |
218 |
gataaagatttacaataaggatccttatggtttccttcacaaatagttaatatcatctcattcgacatactatttcttatcagtattcagtacttagttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27579850 |
gataaagatttacaataaggatccttatggtttccttcacaaatagttaatatcatctcattcgacatactatttcttat-agtattcagtacttagttg |
27579948 |
T |
|
| Q |
318 |
atatgaattatttcaatat |
336 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
27579949 |
atataaattatttcaatat |
27579967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 27723399 - 27723505
Alignment:
| Q |
77 |
tctttgaaccagattgatgttctaacactaattaaattctctatttagttaagttacaattaagcaaaaaagttcataaaatcattatggaatacttgag |
176 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |||||| ||||| | |||||||| |||| |||||||||| || |
|
|
| T |
27723399 |
tctttgaaccagattgatgttttaacactaaataaattctctattt-gttaag-----attaagaaaaaatggtcataaaaccattgtggaatacttaag |
27723492 |
T |
|
| Q |
177 |
aattaatgaacaa |
189 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
27723493 |
aattaaagaacaa |
27723505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 14681100 - 14681196
Alignment:
| Q |
80 |
ttgaaccagattgatgttctaacactaattaaattctctatttagttaagttacaattaagcaaaaaagttcataaaatcattatggaatacttgagaat |
179 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||| | |||||||| ||||| |
|
|
| T |
14681100 |
ttgaaccagatttatgttctaacactaattaaattctcta-ctagttaag-----attaagcaaaaaaggtcataaaaccattgtagaatacttaagaat |
14681193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University