View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_high_10 (Length: 271)
Name: NF17784_high_10
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 20217686 - 20217437
Alignment:
| Q |
1 |
aggtcaattcaaggaaggaaactgctttgtttgatgaatgttctctcacatttaaggatggaaaaccatcacttacttgtgatctctttgattctatcaa |
100 |
Q |
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| T |
20217686 |
aggtcaattcaaggaaggaaactgctttgtttgatgaatgttctctcacatttaaggatggaaaaccatcacttacttgtgatctctttgattctatcaa |
20217587 |
T |
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| Q |
101 |
aattgacattgacttgacttgttctatatgcttggtaagttaattgtgtatgcattactcctcaatttatatgcattatgcgcattctaatttgtcattt |
200 |
Q |
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| T |
20217586 |
aattgacattgacttgacttgttctatatgcttggtaagttaattgtgtatgcattactc-----tttatatgcattatgcgcattctaatttgtcattt |
20217492 |
T |
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| Q |
201 |
gacttggatgcaatttgcaagaagatcaagtcaatttaaagattaggcacatata |
255 |
Q |
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| T |
20217491 |
gacttggatgcaacttgcaagaagatcgagtcaatttaaagattaggcacatata |
20217437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 20237284 - 20237035
Alignment:
| Q |
1 |
aggtcaattcaaggaaggaaactgctttgtttgatgaatgttctctcacatttaaggatggaaaaccatcacttacttgtgatctctttgattctatcaa |
100 |
Q |
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| T |
20237284 |
aggtcaattcaaggaaggaaactgctttgtttgatgaatgttctctcacatttaaggatggaaaaccatcacttacttgtgatctctttgattctatcaa |
20237185 |
T |
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| Q |
101 |
aattgacattgacttgacttgttctatatgcttggtaagttaattgtgtatgcattactcctcaatttatatgcattatgcgcattctaatttgtcattt |
200 |
Q |
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| T |
20237184 |
aattgacattgacttgacttgttctatatgcttggtaagttaattgtgtatgcattactc-----tttatatgcattatgcgcattctaatttgtcattt |
20237090 |
T |
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| Q |
201 |
gacttggatgcaatttgcaagaagatcaagtcaatttaaagattaggcacatata |
255 |
Q |
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| T |
20237089 |
gacttggatgcaacttgcaagaagatcgagtcaatttaaagattaggcacatata |
20237035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 44302198 - 44301949
Alignment:
| Q |
1 |
aggtcaattcaaggaaggaaactgctttgtttgatgaatgttctctcacatttaaggatggaaaaccatcacttacttgtgatctctttgattctatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44302198 |
aggtcaattcaaggaaggaaactgctttgtttgatgaatgttctctcacatttaaggatggaaaaccatcacttacttgtgatctctttgattctatcaa |
44302099 |
T |
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| Q |
101 |
aattgacattgacttgacttgttctatatgcttggtaagttaattgtgtatgcattactcctcaatttatatgcattatgcgcattctaatttgtcattt |
200 |
Q |
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| T |
44302098 |
aattgacattgacttgacttgttctatatgcttggtaagttaattgtgtatgcattactc-----tttatatgcattatgcgcattctaatttgtcattt |
44302004 |
T |
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| Q |
201 |
gacttggatgcaatttgcaagaagatcaagtcaatttaaagattaggcacatata |
255 |
Q |
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| T |
44302003 |
gacttggatgcaacttgcaagaagatcgagtcaatttaaagattaggcacatata |
44301949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 39654027 - 39654125
Alignment:
| Q |
44 |
tctcacatttaaggatggaaaaccatcacttacttgtgatctctttgattctatcaaaattgacattgacttgacttgttctatatgcttggtaagtta |
142 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||| |||||||| ||||||||||| |
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| T |
39654027 |
tctcacatttaaggatggaaaaccatcacttgcttgtgagctctttgattccatcaaaattgatattgatctgacttgctctatatgtttggtaagtta |
39654125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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