View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17784_high_13 (Length: 249)

Name: NF17784_high_13
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17784_high_13
NF17784_high_13
[»] chr1 (9 HSPs)
chr1 (1-141)||(5467175-5467315)
chr1 (37-141)||(298192-298296)
chr1 (39-143)||(8550368-8550472)
chr1 (38-145)||(3491486-3491593)
chr1 (44-141)||(38788925-38789021)
chr1 (89-143)||(5198838-5198892)
chr1 (44-113)||(47370427-47370496)
chr1 (44-145)||(21276614-21276715)
chr1 (49-141)||(47588466-47588558)
[»] chr2 (6 HSPs)
chr2 (42-145)||(14776270-14776373)
chr2 (37-145)||(9374021-9374129)
chr2 (69-145)||(30326106-30326182)
chr2 (39-141)||(35327830-35327931)
chr2 (44-137)||(33830302-33830395)
chr2 (40-145)||(32227431-32227536)
[»] scaffold0154 (1 HSPs)
scaffold0154 (38-145)||(36406-36513)
[»] chr8 (9 HSPs)
chr8 (38-141)||(30069780-30069883)
chr8 (31-131)||(37456102-37456202)
chr8 (50-145)||(7107505-7107600)
chr8 (43-145)||(11257854-11257956)
chr8 (74-145)||(1042780-1042851)
chr8 (74-145)||(16037310-16037381)
chr8 (71-145)||(26014919-26014993)
chr8 (89-141)||(31410913-31410965)
chr8 (101-145)||(35507069-35507113)
[»] chr4 (9 HSPs)
chr4 (40-145)||(10109215-10109320)
chr4 (74-141)||(14958401-14958468)
chr4 (38-145)||(32318510-32318616)
chr4 (39-145)||(22409403-22409509)
chr4 (38-143)||(30538002-30538107)
chr4 (43-141)||(38793721-38793819)
chr4 (93-141)||(20574937-20574985)
chr4 (84-143)||(4960430-4960489)
chr4 (37-145)||(41460611-41460718)
[»] chr3 (10 HSPs)
chr3 (42-141)||(13863669-13863767)
chr3 (42-145)||(36923581-36923684)
chr3 (39-145)||(7681616-7681722)
chr3 (68-141)||(13433736-13433809)
chr3 (44-145)||(21490370-21490471)
chr3 (94-138)||(50524321-50524365)
chr3 (40-131)||(43310338-43310429)
chr3 (39-136)||(28451800-28451897)
chr3 (88-138)||(8702079-8702129)
chr3 (88-138)||(9053966-9054016)
[»] scaffold0102 (1 HSPs)
scaffold0102 (44-145)||(21233-21334)
[»] chr7 (6 HSPs)
chr7 (94-143)||(11667046-11667095)
chr7 (43-145)||(21148389-21148491)
chr7 (39-145)||(38073646-38073752)
chr7 (74-141)||(20884536-20884604)
chr7 (44-121)||(38652729-38652806)
chr7 (89-145)||(37391081-37391137)
[»] chr5 (3 HSPs)
chr5 (74-141)||(25836942-25837009)
chr5 (74-145)||(10044224-10044295)
chr5 (89-141)||(5402771-5402824)
[»] scaffold0007 (1 HSPs)
scaffold0007 (39-145)||(260368-260474)
[»] scaffold0524 (1 HSPs)
scaffold0524 (89-145)||(1481-1537)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 5467315 - 5467175
Alignment:
Q  1 cactactcttaccattatggtcaatagtgtaattagaaaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||| ||||||||||| ||| ||||||||||||||    
T  5467315 cactactcttaccattatgatcaatagtgtaattagaaaagagaaatattaatttgtgcccttagaacacatattaagaatttcattgatagtaattatg 5467216  T
Q  101 tattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  5467215 tattggaaattgtgtgaatttgttattcaaattgtttaata 5467175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 298192 - 298296
Alignment:
Q  37 aaaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtt 136  Q
    ||||||||||| |||||||||||| ||||  || || ||||||||  |||| ||||||||| ||||||||||||||||| ||||| |||||||| |||||    
T  298192 aaaagggaaatgttaacttgtgcccttagggcacatgttaagaattccactaatagtaattgtgtattggaaattgtgttaatttattactcaagttgtt 298291  T
Q  137 taata 141  Q
    |||||    
T  298292 taata 298296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 8550472 - 8550368
Alignment:
Q  39 aagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    ||||||||| ||||||||||||  ||  |||||| ||||||||  |||| |||| |||||||||||||||||||||| ||||| || || |||| |||||    
T  8550472 aagggaaatgttaacttgtgcccgtatgacatatgttaagaattccactaatagaaattatgtattggaaattgtgttaatttattgcttaaatagttta 8550373  T
Q  139 atatt 143  Q
    |||||    
T  8550372 atatt 8550368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 3491593 - 3491486
Alignment:
Q  38 aaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttt 137  Q
    |||||||||| |||||||||||| ||||  || || ||||||||  |||| |||| |||||||||||||||||||||  ||||| || |||||| | |||    
T  3491593 aaagggaaatgttaacttgtgcccttagggcaaatgttaagaattccactaatagaaattatgtattggaaattgtgataatttattgctcaaaattttt 3491494  T
Q  138 aatattaa 145  Q
    ||||||||    
T  3491493 aatattaa 3491486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 38789021 - 38788925
Alignment:
Q  44 aaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    |||| |||||||||||| ||| |  |||| |||||||| | ||| ||||||||||||||||||||||||||| ||||| ||||| || ||||||||||    
T  38789021 aaatgttaacttgtgccctta-agtatatgttaagaattttactaatagtaattatgtattggaaattgtgttaatttattacttaagttgtttaata 38788925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 5198838 - 5198892
Alignment:
Q  89 atagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatatt 143  Q
    |||| |||||||||||||||||||||| ||||| ||| ||||| |||||||||||    
T  5198838 atagaaattatgtattggaaattgtgttaatttattattcaaaatgtttaatatt 5198892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 47370496 - 47370427
Alignment:
Q  44 aaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgt 113  Q
    ||||| ||||||||| | |||  |||||||||||||||  |||| |||| ||||||||||||||||||||    
T  47370496 aaatactaacttgtgtccttatcacatatattaagaattccacttatagaaattatgtattggaaattgt 47370427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 21276715 - 21276614
Alignment:
Q  44 aaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatatt 143  Q
    ||||||||||||||| | ||||  || ||  |||||||  |||| |||| |||||||||||| ||||||||| ||||| | || |||  |||||||||||    
T  21276715 aaatattaacttgtgtccttagggcacatgataagaattccactaatagaaattatgtattgaaaattgtgttaatttatcacgcaagatgtttaatatt 21276616  T
Q  144 aa 145  Q
    ||    
T  21276615 aa 21276614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 47588558 - 47588466
Alignment:
Q  49 ttaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    |||||||||||| | ||| || || ||||||||   ||| |||| || ||||||||| ||||||||| ||||| ||| ||||| |||||||||    
T  47588558 ttaacttgtgccctaagagcacatgttaagaattctactaatagaaactatgtattgaaaattgtgttaatttattattcaaaatgtttaata 47588466  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 14776270 - 14776373
Alignment:
Q  42 ggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    |||||| |||||||||||| ||||| || || |||||||| | | |  |||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  14776270 ggaaatgttaacttgtgccattagagcacatgttaagaattttaatattagtaattatgtattgaaaattgtgttaatttattactcaaattgtttaata 14776369  T
Q  142 ttaa 145  Q
    ||||    
T  14776370 ttaa 14776373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 9374021 - 9374129
Alignment:
Q  37 aaaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtt 136  Q
    ||||| ||||||||||||| |||||||||| || || |||| ||| ||| | | || |||||||||||||||||||| | ||||| || |||||| ||||    
T  9374021 aaaagagaaatattaacttatgcctttagagcacatgttaaaaatttcattaacagaaattatgtattggaaattgttttaatttattgctcaaaatgtt 9374120  T
Q  137 taatattaa 145  Q
    |||||||||    
T  9374121 taatattaa 9374129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 30326182 - 30326106
Alignment:
Q  69 atatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    |||| |||||||| ||| | | || |||||||||||| ||||||||| ||||| ||||||||| |||||||||||||    
T  30326182 atatgttaagaatttcattaagagaaattatgtattgaaaattgtgttaatttattactcaaaatgtttaatattaa 30326106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 35327931 - 35327830
Alignment:
Q  39 aagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    ||||||||| |||||||||||| |||  ||| ||  |||||||  |||| ||||||||| ||||||| ||| ||||| ||||| |||||||| |||||||    
T  35327931 aagggaaatgttaacttgtgcccttaagacacat-gtaagaattccactaatagtaattgtgtattgaaaactgtgttaatttattactcaagttgttta 35327833  T
Q  139 ata 141  Q
    |||    
T  35327832 ata 35327830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 33830395 - 33830302
Alignment:
Q  44 aaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttt 137  Q
    |||| ||||||| |||| ||| |  |||| |||||||| | ||| |||| |||||||||||||||||||||| ||||| || |||||| |||||    
T  33830395 aaatgttaacttatgcccttatagtatatgttaagaattttactaatagaaattatgtattggaaattgtgttaatttattgctcaaaatgttt 33830302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 32227431 - 32227536
Alignment:
Q  40 agggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaa 139  Q
    |||||||| ||||| |||||| ||||  ||||| ||||||||   ||| |||| |||||||||||| |||||||||  |||| ||  | ||| |||||||    
T  32227431 agggaaatgttaacatgtgcccttagggcatatgttaagaattctactaatagaaattatgtattgaaaattgtgttcatttattgtttaaaatgtttaa 32227530  T
Q  140 tattaa 145  Q
    ||||||    
T  32227531 tattaa 32227536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 36513 - 36406
Alignment:
Q  38 aaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttt 137  Q
    |||||||||| |||||||||||| ||| | || || ||||||||  |||| |||| |||||||||||||||||||||| ||||| || |||||| | |||    
T  36513 aaagggaaatgttaacttgtgcccttaaagcacatgttaagaattccactaatagaaattatgtattggaaattgtgttaatttatttctcaaaatattt 36414  T
Q  138 aatattaa 145  Q
    ||||||||    
T  36413 aatattaa 36406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 30069883 - 30069780
Alignment:
Q  38 aaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttt 137  Q
    |||||||||| |||||||||||| |||   || || ||||||||  |||| ||||||||| ||||||||||||||||| ||||| |||||||| ||||||    
T  30069883 aaagggaaatgttaacttgtgcccttaaggcacatgttaagaattccactaatagtaattgtgtattggaaattgtgttaatttattactcaagttgttt 30069784  T
Q  138 aata 141  Q
    ||||    
T  30069783 aata 30069780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 37456202 - 37456102
Alignment:
Q  31 aattagaaaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaa 130  Q
    ||||| |||| ||||||  ||||||||||| ||||  ||  | ||||||||  |||| |||| |||||||||||||||||||||| ||||| ||||||||    
T  37456202 aattaaaaaatggaaatgctaacttgtgcccttagggcacgtgttaagaattccactaatagaaattatgtattggaaattgtgttaatttattactcaa 37456103  T
Q  131 a 131  Q
    |    
T  37456102 a 37456102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 7107600 - 7107505
Alignment:
Q  50 taacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    ||||||||||| |||   || || ||||||||  |||| |||| |||||||||||||||||||||| ||||| || |||||| |||| ||||||||    
T  7107600 taacttgtgcccttatggcacatgttaagaattccactaatagaaattatgtattggaaattgtgtaaatttattgctcaaaatgttgaatattaa 7107505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 11257854 - 11257956
Alignment:
Q  43 gaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatat 142  Q
    ||||| |||||||||||| ||||  || || ||||||||  |||| |||| |||||||||||  ||||||||| ||||| || || ||| ||||||||||    
T  11257854 gaaatgttaacttgtgcccttagggcacatgttaagaattccactaatagaaattatgtattataaattgtgttaatttattgcttaaaatgtttaatat 11257953  T
Q  143 taa 145  Q
    |||    
T  11257954 taa 11257956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 1042851 - 1042780
Alignment:
Q  74 ttaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    |||| ||| ||||| |||| |||||||||||| ||||||||| ||||| || || ||| |||||||||||||    
T  1042851 ttaaaaatttcactaatagaaattatgtattgaaaattgtgttaatttattgcttaaaatgtttaatattaa 1042780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 16037310 - 16037381
Alignment:
Q  74 ttaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    ||||||||  ||||||||| |||||||||| ||||||||| | ||||| ||  ||||| |||||||||||||    
T  16037310 ttaagaattccactgatagaaattatgtatcggaaattgtattaatttattggtcaaaatgtttaatattaa 16037381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 26014993 - 26014919
Alignment:
Q  71 atattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    |||||||||||  || | |||| ||||||||||||||| |||||| ||||| ||| ||||| |||||||| ||||    
T  26014993 atattaagaataccattaatagaaattatgtattggaatttgtgttaatttattattcaaaatgtttaatgttaa 26014919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 31410913 - 31410965
Alignment:
Q  89 atagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    ||||||||||| ||||||||||||||| ||||| ||  ||||| |||||||||    
T  31410913 atagtaattatttattggaaattgtgttaatttattgttcaaaatgtttaata 31410965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 35507069 - 35507113
Alignment:
Q  101 tattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    ||||| ||||||||| ||||| |||||||| ||||||||||||||    
T  35507069 tattgaaaattgtgttaatttattactcaagttgtttaatattaa 35507113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 10109215 - 10109320
Alignment:
Q  40 agggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaa 139  Q
    |||||||| |||||||||| | ||||  || |||||||||||  |||| |||| |||||||||||| ||||||||| ||||| || |||||| |||||||    
T  10109215 agggaaatgttaacttgtgtccttagggcacatattaagaattccactaatagaaattatgtattgaaaattgtgttaatttattgctcaaaatgtttaa 10109314  T
Q  140 tattaa 145  Q
    ||||||    
T  10109315 tattaa 10109320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 14958468 - 14958401
Alignment:
Q  74 ttaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    |||||||| ||||| |||||||| |||||||| ||||||||||||||| |||||||| ||||||||||    
T  14958468 ttaagaatttcactaatagtaatcatgtattgaaaattgtgtgaatttattactcaacttgtttaata 14958401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 32318510 - 32318616
Alignment:
Q  38 aaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttt 137  Q
    |||||||||| |||||||||||| ||||  || || |||||||| ||| | |||| |||||||||||| ||||||||| ||||| ||  ||||| |||||    
T  32318510 aaagggaaatgttaacttgtgcccttagc-cacatgttaagaatttcattaatagaaattatgtattgaaaattgtgttaatttattgttcaaaatgttt 32318608  T
Q  138 aatattaa 145  Q
    ||||||||    
T  32318609 aatattaa 32318616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 22409509 - 22409403
Alignment:
Q  39 aagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    ||||||||| |||||||||||| ||||  || || ||||||||   ||| |||| ||| |||||||||||||||||| ||||| || || ||| ||||||    
T  22409509 aagggaaatgttaacttgtgcccttagggcacatgttaagaattctactaatagaaatcatgtattggaaattgtgttaatttattgcttaaaatgttta 22409410  T
Q  139 atattaa 145  Q
    |||||||    
T  22409409 atattaa 22409403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 30538107 - 30538002
Alignment:
Q  38 aaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttt 137  Q
    |||||||||| |||| |||| || |||||| | || ||||||||  || | |||| |||||||||||| ||||||||| ||||| || |||||| |||||    
T  30538107 aaagggaaatgttaatttgtacccttagaatacatgttaagaattccattaatagaaattatgtattgaaaattgtgttaatttattgctcaaaatgttt 30538008  T
Q  138 aatatt 143  Q
    ||||||    
T  30538007 aatatt 30538002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 38793721 - 38793819
Alignment:
Q  43 gaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    ||||| |||||||||||| |||| ||  || ||||||||  |||| ||||||||| ||||||| ||||||||| ||||| || || || ||||||||||    
T  38793721 gaaatgttaacttgtgcccttaggactcatgttaagaattccactaatagtaattgtgtattgtaaattgtgttaatttattgcttaagttgtttaata 38793819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 20574985 - 20574937
Alignment:
Q  93 taattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||||||||||    
T  20574985 taattgtgtattggaaattgtgttaatttattactcaagttgtttaata 20574937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 4960489 - 4960430
Alignment:
Q  84 cactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatatt 143  Q
    |||| |||| ||||| |||||| ||||||||| ||||| || ||||||||||||||||||    
T  4960489 cactaatagaaattacgtattgaaaattgtgttaatttattgctcaaattgtttaatatt 4960430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 41460718 - 41460611
Alignment:
Q  37 aaaagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtt 136  Q
    ||||| ||||| ||||||||||||||||| ||| || ||||||||  || | |||| || ||||||||  ||||||||| ||||| ||||| |||   ||    
T  41460718 aaaagagaaatgttaacttgtgcctttaggacacatgttaagaattccagtaatag-aaatatgtattaaaaattgtgttaatttattacttaaaaaatt 41460620  T
Q  137 taatattaa 145  Q
    |||||||||    
T  41460619 taatattaa 41460611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 13863767 - 13863669
Alignment:
Q  42 ggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    |||||| |||||||||||||| ||  || || ||||||||  |||| ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||    
T  13863767 ggaaatgttaacttgtgcctt-agggcacatgttaagaattccactaatagtaattgtgtattggaaattgtgttaatttattactcaagttgtttaata 13863669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 36923684 - 36923581
Alignment:
Q  42 ggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    |||||| |||| ||||||  ||||  || |||||||||||  |||| |||| |||||||||||||||||||||| ||||| || |||||| |||||||||    
T  36923684 ggaaatgttaatttgtgctcttagggcacatattaagaattccactaatagaaattatgtattggaaattgtgttaatttattgctcaaaatgtttaata 36923585  T
Q  142 ttaa 145  Q
    ||||    
T  36923584 ttaa 36923581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 7681722 - 7681616
Alignment:
Q  39 aagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    ||||||||| |||||||||||  ||||| ||||| ||| ||||   ||| ||||||||| ||||||||||||||||| ||||| ||| |||| | |||||    
T  7681722 aagggaaattttaacttgtgctcttagagcatatgttatgaattctactaatagtaattgtgtattggaaattgtgttaatttattattcaagtagttta 7681623  T
Q  139 atattaa 145  Q
    |||||||    
T  7681622 atattaa 7681616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 13433809 - 13433736
Alignment:
Q  68 catatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    ||||||||||||||  |||| ||| ||||| ||||||| ||||| ||||||||| |||||||||||||||||||    
T  13433809 catatattaagaattccactaataataattttgtattgaaaattatgtgaatttattactcaaattgtttaata 13433736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 21490370 - 21490471
Alignment:
Q  44 aaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatatt 143  Q
    ||||||||||||||| | ||||| || || ||||||||  |||| |||  |||||| ||||||||||||||| ||||| ||  ||||| |||||||||||    
T  21490370 aaatattaacttgtgtccttagagcacatgttaagaattccactaatataaattatatattggaaattgtgttaatttattgttcaaaatgtttaatatt 21490469  T
Q  144 aa 145  Q
    ||    
T  21490470 aa 21490471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 50524365 - 50524321
Alignment:
Q  94 aattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  50524365 aattatgtattggaaattgtgttaatttattactcaaattgttta 50524321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 43310338 - 43310429
Alignment:
Q  40 agggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaa 131  Q
    ||||||||  ||||||||||||||||| || || ||||||||   ||| |||| |||| ||||||||||||||||| ||||| || ||||||    
T  43310338 agggaaatgctaacttgtgcctttagagcacatgttaagaattctactaatagaaattttgtattggaaattgtgttaatttattgctcaaa 43310429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 28451897 - 28451800
Alignment:
Q  39 aagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtt 136  Q
    ||||||||| |||||||||||| ||||  || || ||||||||  |||| |||  |||||| ||||||||||||||| ||||| ||| ||||| ||||    
T  28451897 aagggaaatgttaacttgtgcccttagggcacatgttaagaattccactaataaaaattatatattggaaattgtgttaatttattattcaaaatgtt 28451800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 8702129 - 8702079
Alignment:
Q  88 gatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    ||||||| |||||||||| ||||||||| ||||| ||||||||||| ||||    
T  8702129 gatagtatttatgtattgaaaattgtgttaatttattactcaaattattta 8702079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 9054016 - 9053966
Alignment:
Q  88 gatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    ||||||| |||||||||| ||||||||| ||||| ||||||||||| ||||    
T  9054016 gatagtatttatgtattgaaaattgtgttaatttattactcaaattattta 9053966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 21233 - 21334
Alignment:
Q  44 aaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatatt 143  Q
    |||| ||||||||||||||||| ||| || ||||||||  || | |||  |||||| ||||||||||||||| ||||| ||| ||||| |||||||||||    
T  21233 aaatgttaacttgtgcctttaggacacatgttaagaattccaataataaaaattatatattggaaattgtgttaatttattattcaaaatgtttaatatt 21332  T
Q  144 aa 145  Q
    ||    
T  21333 aa 21334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 11667046 - 11667095
Alignment:
Q  94 aattatgtattggaaattgtgtgaatttgttactcaaattgtttaatatt 143  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  11667046 aattatgtattggaaattgtgttaatttattgctcaaattgtttaatatt 11667095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 21148389 - 21148491
Alignment:
Q  43 gaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatat 142  Q
    ||||| |||| |||||| ||||  ||| || ||||||||  |||| |||  |||||||||||| ||||||| | ||||| ||||||||| ||||||||||    
T  21148389 gaaatgttaagttgtgcttttaagacacatgttaagaattccactaataaaaattatgtattgaaaattgtattaatttattactcaaaatgtttaatat 21148488  T
Q  143 taa 145  Q
    |||    
T  21148489 taa 21148491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 38073752 - 38073646
Alignment:
Q  39 aagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    ||||||||| |||||||||||| ||||  || || ||||| || || || |||| ||||||||||| |||||||||| ||||| || |||||| | ||||    
T  38073752 aagggaaatgttaacttgtgcccttagggcacatgttaagcatttctctaatagaaattatgtattagaaattgtgttaatttattgctcaaaatattta 38073653  T
Q  139 atattaa 145  Q
     ||||||    
T  38073652 gtattaa 38073646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 20884604 - 20884536
Alignment:
Q  74 ttaagaatctcactgatagtaattatgtattggaaattgtgtgaattt-gttactcaaattgtttaata 141  Q
    ||||||||  |||| ||||||||| | ||||||||||||||| |||||  |||||||||||||||||||    
T  20884604 ttaagaattccactaatagtaattgtatattggaaattgtgttaatttatttactcaaattgtttaata 20884536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 38652806 - 38652729
Alignment:
Q  44 aaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaattt 121  Q
    |||| ||||||||||| |||||  || || ||||||||  |||| |||| |||||||||||||||| ||||| |||||    
T  38652806 aaatgttaacttgtgcttttagggcacatgttaagaattccactaatagaaattatgtattggaaagtgtgttaattt 38652729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 37391081 - 37391137
Alignment:
Q  89 atagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    ||||| ||||| |||| |||||||||| ||||| || |||||| |||||||||||||    
T  37391081 atagttattatttattagaaattgtgttaatttattgctcaaaatgtttaatattaa 37391137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 25836942 - 25837009
Alignment:
Q  74 ttaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaata 141  Q
    ||||||||  |||| ||| ||||||||||||||||| |||||  |||| |||||||||||||||||||    
T  25836942 ttaagaattccactaataataattatgtattggaaagtgtgttcatttattactcaaattgtttaata 25837009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 10044295 - 10044224
Alignment:
Q  74 ttaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    |||||||| ||| | |||| |||||||||||| || |||||| ||||| || |||||| |||||||||||||    
T  10044295 ttaagaatgtcattaatagaaattatgtattgaaagttgtgttaatttattgctcaaaatgtttaatattaa 10044224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 5402824 - 5402771
Alignment:
Q  89 atagtaattatgtattggaaattgtgtgaatttgttac-tcaaattgtttaata 141  Q
    ||||||||| ||||||||||||||||| ||||| |||| |||| ||||||||||    
T  5402824 atagtaattgtgtattggaaattgtgttaatttattacttcaagttgtttaata 5402771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 260474 - 260368
Alignment:
Q  39 aagggaaatattaacttgtgcctttagaacatatattaagaatctcactgatagtaattatgtattggaaattgtgtgaatttgttactcaaattgttta 138  Q
    |||||||||  ||||||||||| | ||  || |||||||||||  |||| |||| |||||||||||| || |||||| ||||| ||  ||||| ||||||    
T  260474 aagggaaatgataacttgtgccctaagggcacatattaagaataccactaatagaaattatgtattgaaatttgtgttaatttattgttcaaaatgttta 260375  T
Q  139 atattaa 145  Q
    || ||||    
T  260374 atgttaa 260368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 1537 - 1481
Alignment:
Q  89 atagtaattatgtattggaaattgtgtgaatttgttactcaaattgtttaatattaa 145  Q
    |||| |||||||||| ||||||||||| ||||| || |||||| ||||| |||||||    
T  1537 atagaaattatgtatcggaaattgtgttaatttattgctcaaaatgtttgatattaa 1481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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