View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_high_17 (Length: 225)
Name: NF17784_high_17
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 21706251 - 21706055
Alignment:
| Q |
19 |
catatttgggaaattaaataaattaggctgctgcaaaatagaacagacttcaatttgactatgatcagagcgtatcatcacagcgatccatgacaaagcc |
118 |
Q |
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| T |
21706251 |
catatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcattttgactatgatcagagcgtatcatcacaaagatccatgacaaagcc |
21706152 |
T |
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| Q |
119 |
aatttaggacgatcgctcacaagaagatcctttaaagagtgagatggccactttgcatgacagtattcgggacatatcccaataaaattgtgaaggaa |
216 |
Q |
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| T |
21706151 |
aatttgggacaatcgttcacaacaagagcctttaaagagtgagatggccactttgcaagacagtattcgggacatatcccaat-aaattgtgaaggaa |
21706055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 21713334 - 21713461
Alignment:
| Q |
74 |
tgactatgatcagagcgtatcatcacagcgatccatgacaaagccaatttaggacgatcgctcacaagaagatcctttaaagagtgagatggccactttg |
173 |
Q |
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| T |
21713334 |
tgactatgaccagaacgaatcataagagcgatccacgacatatccaatttgggacaatcctccacaacaagatccctcaaagagtgagatggccacttcg |
21713433 |
T |
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| Q |
174 |
catgacagtattcgggacatatcccaat |
201 |
Q |
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| T |
21713434 |
catgacagtattcaggacacatcccaat |
21713461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 21709144 - 21709097
Alignment:
| Q |
73 |
ttgactatgatcagagcgtatcatcacagcgatccatgacaaagccaa |
120 |
Q |
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| T |
21709144 |
ttgactatgatcagagcgtatcatcacagcgatccataacatagccaa |
21709097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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