View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17784_high_9 (Length: 275)

Name: NF17784_high_9
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17784_high_9
NF17784_high_9
[»] chr1 (6 HSPs)
chr1 (175-273)||(48043635-48043734)
chr1 (18-90)||(48043874-48043946)
chr1 (180-270)||(48051611-48051701)
chr1 (187-264)||(48056891-48056968)
chr1 (176-243)||(48045485-48045552)
chr1 (92-130)||(48043794-48043832)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 48043734 - 48043635
Alignment:
Q  175 gggattccactgctggttctaggt-aataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg 273  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48043734 gggattccactgctggttctaggttaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg 48043635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 48043946 - 48043874
Alignment:
Q  18 gaactagcaggtatgatgttgatgcagccgcttatgagaatttacctgcttcaagaagtgaactccatgactt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48043946 gaactagcaggtatgatgttgatgcagccgcttatgagaatttacctgcttcaagaagtgaactccatgactt 48043874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 48051701 - 48051611
Alignment:
Q  180 tccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcct 270  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  48051701 tccactgctggttctaagtaacaagattgataaacctggggatttgtctaagcaagacctgacagaaaaggtttaagtagtgtgtgatcct 48051611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 48056968 - 48056891
Alignment:
Q  187 ctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgt 264  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||||||  |||| ||||||| |||||| |||||    
T  48056968 ctggttcttggtaataagattgacaaacctggtgctttgtctaagcaagacacgacagaaaagatgtaagtactgtgt 48056891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 48045552 - 48045485
Alignment:
Q  176 ggattccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgaca 243  Q
    |||||| | |||||||| |||||||||| |||||||||||||   |||||||||||||||||| ||||    
T  48045552 ggattcaattgctggttttaggtaataaaattgacaaacctgacaatttgtctaagcaagacccgaca 48045485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 48043832 - 48043794
Alignment:
Q  92 aaagaatggagtgataagggtgatctcagattcaattcc 130  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  48043832 aaagaatggagtgataagggtgatctcagattcgattcc 48043794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University