View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_1 (Length: 664)
Name: NF17784_low_1
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 9651100 - 9650620
Alignment:
| Q |
1 |
caaatataaagacatgctacagaaaaatata--gctaaagtnnnnnnnnnnncagcgattaccagataaaagacatgcatgaggattccagtctatagca |
98 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9651100 |
caaatataaagacatgctacagaaaaatatatagctaaagtaaaaaaaaaa-cagcgattaccagataaaagacatgcatgaggattccagtctatagca |
9651002 |
T |
|
| Q |
99 |
taaccttcatctttgtgcttaaatttttgtagtggaacctgagctacatcatctccttggacaccctccgtttctgtctctgcaagagccttgagatgag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9651001 |
taaccttcatctttgtgcttaaatttttgtagtggaacctgagctacatcatctccttggacaccctccgtttctgtctctgcaagagccttgagatgag |
9650902 |
T |
|
| Q |
199 |
agctcatgtcccagatctacaagttcatcactcaaagtatcagatttatacaaaaatatacgactcggtaagaatgaatagagtttaacttctgtgattg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9650901 |
agctcatgtcccagatctacaagttcatcactcaaagtatcagatttatacaaaaatatacgactcggtaagaatgaatagagtttaacttctgtgattg |
9650802 |
T |
|
| Q |
299 |
aaagagttgatgcagaaaaagataaattgcaacccttaaccttagctgctgctaaaatttaagaactttcagaaatttcaatatgttgcaattgcaatac |
398 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9650801 |
aaagagttgatgcagaaaaagataaattgcaaccctgaaccttagctgctgctaaaatttaagaactttcagaaatttcaatatgttgcaattgcaaaac |
9650702 |
T |
|
| Q |
399 |
ttaggattgagtaacctcatttttatcatagaccaagaattatatctggacaatattaatcatatcaaatcgaacttgtaac |
480 |
Q |
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| T |
9650701 |
ttaggattgagtaacctcatttttatcatagagcaagaattatatctggacaatattaatcatatcaaatcgaacttgtaac |
9650620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 478 - 650
Target Start/End: Complemental strand, 9650586 - 9650414
Alignment:
| Q |
478 |
aacatgttatagaaccgcataagtattatcttaccagtgtatgtaggatcacgaatcagaccatgggatcggaacatcgatctatgtaactgtttgttat |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9650586 |
aacatgttatagaaccgcataagtattatcttaccagtgtatgtaggatcacgaatcagaccatgggatcggaacatcgatctacgtaactgtttgttat |
9650487 |
T |
|
| Q |
578 |
agtgctaaacattctatgagccttatttcaaaaattaatttacaaggttgtgtgattctattttatccctatg |
650 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9650486 |
agtgctaaacattctatgagccttatttcaaaaattaatttacaaggttgtgtggttctattttatccctatg |
9650414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 79 - 330
Target Start/End: Original strand, 34736554 - 34736804
Alignment:
| Q |
79 |
gaggattccagtctatagcataaccttcatctttgtgcttaaatttttgtagtggaacctgagctacatcatctccttggacaccctccgtttctgtctc |
178 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||| || ||||||||||| |
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| T |
34736554 |
gaggactccagtctatagcatagccttcatctttgtgcttaaatttttgtagtggagcctgaactgcatcaactccttggacaccatcggtttctgtctc |
34736653 |
T |
|
| Q |
179 |
tgcaagagccttgagatgagagctcatgtcccagatctacaagttcatcactcaaagtatcagatttatacaaaaatatacgactcggtaagaatgaa-t |
277 |
Q |
| |
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||| ||||| || |||||||||||||||||||||||||| || || || | || || ||||||||| |||||||||||| |||||||||||||||| | |
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| T |
34736654 |
tgctagagcattaagatgagagctcatgtcccagatctaaaaatttatta--cacagaatcagatttgaacaaaaatatacaactcggtaagaatgaagt |
34736751 |
T |
|
| Q |
278 |
agagtttaacttctgtgattgaaagagttgatgcagaaaaagataaattgcaa |
330 |
Q |
| |
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|||||||||||||| || ||||||||| || |||||| ||| ||||||||||| |
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| T |
34736752 |
agagtttaacttctttgtttgaaagagatggtgcagagaaatataaattgcaa |
34736804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 34736844 - 34736882
Alignment:
| Q |
379 |
atatgttgcaattgcaatacttaggattgagtaacctca |
417 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
34736844 |
atatgttgcaattgcaatacttaggactgagtaacctca |
34736882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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