View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_10 (Length: 292)
Name: NF17784_low_10
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 44225082 - 44224815
Alignment:
| Q |
10 |
acatcatcaagctaactcaggtttggaatctatcccgctcttttataaaagtgaaatagaaattctttttcatttatacattcatgaccatgattttctg |
109 |
Q |
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| T |
44225082 |
acatcttcaagctaactcaggtttggaatctatcccgctcttttatataagtgaaatagaaattctttttcatttatacattcatgaccatgattttctg |
44224983 |
T |
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| Q |
110 |
tgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgttttttcggactgagatgcatcgcaatgat |
209 |
Q |
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| T |
44224982 |
tgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgttttttcggactgagatgcatcgcaatgat |
44224883 |
T |
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| Q |
210 |
caggatgatgcgggtgtttatgccggtgctttgtttttcacactagtaacgatgatgtttaatggaat |
277 |
Q |
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| T |
44224882 |
caggatgatgcgggtgtttatgccggtgctttgtttttcacactagtaacgatgatgtttaatggaat |
44224815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 44235896 - 44235625
Alignment:
| Q |
10 |
acatcatcaagctaactcaggtttggaatctatcccgctctttt-ataaaagtga---aatagaaattctttttcatttatacattcatgaccatgattt |
105 |
Q |
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| T |
44235896 |
acatcttcaagctaactcaggtttggaatctatcccgctctttttataaatataagcaagtagatattctttttcatttatacattcatcaccatgattt |
44235797 |
T |
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| Q |
106 |
tctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgttttttcggactgagatgcatcgcaa |
205 |
Q |
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| T |
44235796 |
tctgtgacataacggtttgttcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgttttttcggactgagatgcatcgcaa |
44235697 |
T |
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| Q |
206 |
tgatcaggatgatgcgggtgtttatgccggtgctttgtttttcacactagtaacgatgatgtttaatggaat |
277 |
Q |
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| T |
44235696 |
taatcaggatgatgcgggtgtttatgctggtgctttgtttttcacactggtaacgatgatgtttaatggaat |
44235625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 44212921 - 44212649
Alignment:
| Q |
10 |
acatcatcaagctaactcaggtttggaatctatcccgctctttt------ataaaagtgaaatagaaattctttttcatttatacattcatgaccatgat |
103 |
Q |
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| T |
44212921 |
acatcttcaagctaactcaggtttgtaatctatcccgctcttttttataaatataagt-aaatagattatctttttcatttatacattcatgaccatgat |
44212823 |
T |
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| Q |
104 |
tttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgttttttcggactgagatgcatcgc |
203 |
Q |
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| T |
44212822 |
tttctgtgacataacggttttctcttcatgctttgtttttcagcttttcatcatggcattgattgcaatgacactgttttttcggactgagatgcatcgc |
44212723 |
T |
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| Q |
204 |
aatgatcaggatgatgcgggtgtttatgccggtgctttgtttttcacactagtaacgatgatgtttaatggaat |
277 |
Q |
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||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44212722 |
gatgatcaggatgacgcaggtgtttatgctggtgctttgtttttcacactagtaacgatgatgtttaatggaat |
44212649 |
T |
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