View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17784_low_17 (Length: 239)
Name: NF17784_low_17
Description: NF17784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17784_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 31205414 - 31205213
Alignment:
| Q |
22 |
attcaaaactaagggataaaggaagtaccaaaggtggtatctcagctaa----agcgtccaacatgagtgacaccactactaccattgttgacaacacat |
117 |
Q |
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| T |
31205414 |
attcaaaactaaggaataaaggaagtaccaaaggtggtatctcagctttcatgagcatccaacatgaatgacaccactactaccattgttgacaacacat |
31205315 |
T |
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| Q |
118 |
agaagagagaagacgggg-aacccacaaacattgaattggagaagaaacccacaagtgaaatcagtatcaattcaagaagcaccttcaaattgctagata |
216 |
Q |
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| T |
31205314 |
agaagagagaagaagggggaacccatgaacattgaattggagaagaaacccacaagtgaaatcagtatcaattcaagaagcaccttcaaattgctagata |
31205215 |
T |
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| Q |
217 |
at |
218 |
Q |
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|| |
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| T |
31205214 |
at |
31205213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 32399663 - 32399699
Alignment:
| Q |
22 |
attcaaaactaagggataaaggaagtaccaaaggtgg |
58 |
Q |
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| T |
32399663 |
attcaaaactaagggataaaggaagtaccaaaggtgg |
32399699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 43415531 - 43415655
Alignment:
| Q |
96 |
actaccattgttgacaacacatagaagagagaagacggggaacccacaaacattgaattggagaagaaac------ccacaagtgaaatcagtatcaatt |
189 |
Q |
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| T |
43415531 |
actaccattgtcgacaaaactgggaagagagaagacggggaacccacaaacattgaattggagaagaaacaacgattcaaaagtgaaatcaatatcaatt |
43415630 |
T |
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| Q |
190 |
caagaagcaccttcaaattgctaga |
214 |
Q |
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| T |
43415631 |
caagaagcaccttcaaattgctaga |
43415655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 43704000 - 43704120
Alignment:
| Q |
99 |
accattgttgacaacacatagaagagagaagacggggaacccacaaacattgaattggagaagaaac------ccacaagtgaaatcagtatcaattcaa |
192 |
Q |
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|||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
43704000 |
accattgtcgacaacacagggaagagagaagacagggaacccgcaaacattgaattggagaagaaacaacgattcaaaagtgaaatcaatatcaattcaa |
43704099 |
T |
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| Q |
193 |
gaagcaccttcaaattgctag |
213 |
Q |
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| T |
43704100 |
gaagcaccttcaaattgctag |
43704120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 8359133 - 8359035
Alignment:
| Q |
118 |
agaagagagaagacgggg-aacccacaaacattgaattggagaagaaac------ccacaagtgaaatcagtatcaattcaagaagcaccttcaaattg |
209 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
8359133 |
agaagagagaagacgggggaacccacaaacattgaattggagaagaaacaatgattcacaagtgaaatcaatatcaattcaagaagtaccttcaaattg |
8359035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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